Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1567 188 8e-43 seq3120 122 1e-22 >seq1567 Length=2367 Score = 188 bits (208), Expect = 8e-43 Identities = 584/895 (65%), Gaps = 14/895 (2%) Strand=Plus/Plus Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 53842 |||||||| || | || ||||| || ||||| ||||||| ||||||||||||| ||| Sbjct 1007 TTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAAACCATG 1066 Query 53843 AATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTT 53902 || || ||||| ||||| | || | || | || || | ||| || ||||||| Sbjct 1067 AAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGGCGTACCATACCTTTTGAGCCTTG 1126 Query 53903 ATTATAGATTTGTATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGT 53960 || | ||| || | | |||||||||||| | ||||| | ||| || || | Sbjct 1127 AT----GGTTT-TACCACGACCTTCTCTTTCGTAACGGGTATATAGCTCTTCGAATTCTT 1181 Query 53961 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 54020 | |||||||| | |||||| || || || || | | || | ||| | || | Sbjct 1182 CACCCCAAACGTCGTCCAAACCTGGGGCAGCACTTGGTGAGAATAAGGTCCAGGCCCCAT 1241 Query 54021 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 54080 | || | || || ||||| || ||||| |||||||| ||||| || | |||||| | Sbjct 1242 CCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTTG 1301 Query 54081 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 54140 | | ||| || || || | ||||| | | ||||| || | | || || | || Sbjct 1302 CACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCAT 1361 Query 54141 GCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 54200 |||| || |||||| | | || | | || || | ||||| || || || || | || Sbjct 1362 GCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGT 1421 Query 54201 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGG 54260 | | || ||||| || | || | | ||| ||||| | || || || | ||| |||| Sbjct 1422 AACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTGG 1481 Query 54261 TCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGACCTATCCCCCCT 54319 | || | ||||| || ||| ||||||||| | || ||| ||||| | || ||| Sbjct 1482 TACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGA-AGACCAACACCACCT 1540 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 || | || || || | || || ||| || || || || || || || || || Sbjct 1541 GCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTCG 1600 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 ||| ||||| || || ||||| ||||||||| || | || || ||||||||| Sbjct 1601 TCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAAT 1660 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 | || || |||||||| || || || | || | | ||||| |||| | | Sbjct 1661 AGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCACG 1720 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 || || ||||| | ||||| |||| || |||||||| | || || || || | | Sbjct 1721 GACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACGT 1780 Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 || | | | || || | | |||| ||| || ||||| ||| ||||| |||||| Sbjct 1781 TCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAAA 1839 Query 54620 TAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||| |||| ||||| |||| ||||| | || | ||||| || |||| || Sbjct 1840 TAGGTGTACTTGAAA--TCTCTGTCGTACACGATGGCCGAGTTCAGCGTATCTTT 1892 >seq3120 Length=488 Score = 122 bits (134), Expect = 1e-22 Identities = 267/392 (68%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 54284 GCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCAT 54343 |||||||| || ||| |||||| || || || || |||| || || || || ||| Sbjct 79 GCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACAT 138 Query 54344 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 54403 || || || || ||||| || || || ||||||| |||| || ||| |||||| Sbjct 139 TCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAG 198 Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 |||||||| | || || || || ||||| || ||||| ||||| ||||| Sbjct 199 GAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAG 258 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAAT 54522 ||||| || | | || || || || | ||| | || || | || | ||||| Sbjct 259 TATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCG-TGAAT 317 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT-GTTTATTT 54581 |||| ||||| | ||| | | ||| || || | |||| | | |||| ||| | | Sbjct 318 ACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAA-CTTGACCGTTGACTC 376 Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTCGT 54640 ||| ||||| || ||| |||||||||||||| || || |||| |||||| |||| Sbjct 377 TCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTGTACTGAAAA-TCTCTG 435 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 || || | |||| ||||||| ||||||||||| Sbjct 436 TCATAGACAATAGCTGAGTTTAGTTTATCCTT 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593692025242800