Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1567 210 2e-49 seq2084 201 1e-46 seq3120 120 3e-22 >seq1567 Length=2367 Score = 210 bits (232), Expect = 2e-49 Identities = 430/638 (67%), Gaps = 1/638 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || |||| |||||||| || ||||||||||| ||||| || | || || Sbjct 1246 TTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTTGCACG 1305 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || || || || ||||| | | ||| | |||||| || | ||| |||||||| Sbjct 1306 AATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCATGCCA 1365 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 ||||| | | ||| |||||| || || |||||||| || || || || || |||||||| Sbjct 1366 TGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGTAACG 1425 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || ||||||||| | || | | ||| || | | ||||| || | ||| || Sbjct 1426 TGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTGGTACC 1485 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | || ||| | | |||| |||| | || | ||| | || || | | Sbjct 1486 TGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCACCTGCAGT 1545 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || | ||||| ||||||||| || || || ||| ||| || || Sbjct 1546 CTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTCGTCCTT 1605 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || | || |||||| ||||||||||| | | |||||| |||| || ||||| Sbjct 1606 CATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAATAGTGT 1665 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| ||||| || ||||||| |||||| | ||||| || | | ||| || Sbjct 1666 GGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCACGGACTC 1725 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || || ||||| ||||| | ||| || ||||| | || | ||| || | ||| | Sbjct 1726 GATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACGTTCGGC 1785 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | | |||| | | | | ||| || ||||||| || || ||||| ||||||||| Sbjct 1786 CACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAAATAGGT 1844 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || || || || | |||| ||| |||||||| |||| Sbjct 1845 GTACTTGAAATCTCTGTCGTACACGATGGCCGAGTTCA 1882 >seq2084 Length=1521 Score = 201 bits (222), Expect = 1e-46 Identities = 420/617 (68%), Gaps = 8/617 (1%) Strand=Plus/Plus Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 ||| | || || |||||||| ||||| ||||| || ||||| || |||||||| | || Sbjct 489 GTGCTTGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAAAACTTGGTCGAGAACTTC 548 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || || || || | ||||||| | | || ||||| || || | || || || Sbjct 549 TCCACCGAGGTCCAGATCCCGGAGGCCAAGAGTTTCTACGGGTTCCAGATCGCAATCGAG 608 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||| | || || |||| || || | | ||||| || ||| | |||||| | | || Sbjct 609 AACATCCACTCCGAAACCTACTCCTTGTTGATCGACACCTACATCAAGGACCCCAAGGA- 667 Query 57870 AAACGTAGACT-GTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928 || || || ||||||||| ||||| || || || | ||| | ||||||| || || Sbjct 668 AAGCGAGTTCTTGTTCAACGCCATCGACACCATCCCAGAAATCTGCGAGAAGGCCGAATG 727 Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGC 57988 | | | | |||||| | |||| ||| ||||| || || || |||||||||| Sbjct 728 GGCCCTTAGATGGATCCAGGACGCCGATGCCCTGTTCGGTGAAAGACTGGTCGCGTTCGC 787 Query 57989 CGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACG 58048 | || |||||||| | |||||||| || ||| || | || || ||| |||||||| | Sbjct 788 CTCCATCGAAGGTGTCTTCTTTTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAAAG 847 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 || |||||||||| |||| || |||||| |||| | | ||||| ||| | || Sbjct 848 AGGTATGATGCCCGGTTTGACCTTCTCCAACGAACTGATCTGCAGAGACGAAGGTTTGCA 907 Query 58109 TACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC-GACGC-GGGATCGC 58166 || || ||||| || | ||| | | ||| | || || || ||| | | |||| Sbjct 908 CACCGACTTTGCCTGTTTGTTGTTCGCCCACTTGAAAAACAAGCCGGACCCAGCCATCG- 966 Query 58167 ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA-AATGAGTTTGTCACCGAAGCCCT 58225 || | | || |||||||||| |||| ||||||| || || | || || ||| | Sbjct 967 -TCGAGAAAATCGTCACCGAGGCCGTCGAGATCGAACAAAGA-TACTTCCTAGACGCCTT 1024 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 || || ||| |||| ||||||||| || |||||| | ||| | ||||| || || Sbjct 1025 GCCAGTCGCCTTGCTAGGTATGAACGCCGACTTGATGAACCAATACGTCGAGTTCGTCGC 1084 Query 58286 CGACAGACTTTTGCTCG 58302 |||||||||||| ||| Sbjct 1085 AGACAGACTTTTGGTCG 1101 >seq3120 Length=488 Score = 120 bits (132), Expect = 3e-22 Identities = 233/342 (68%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 |||| |||| |||||||| || | ||| || || || | | ||| || |||| || | Sbjct 77 TTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCAC 136 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 ||| |||| |||||||||||| || || ||| || || || | || || | ||||| Sbjct 137 ATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAAC 196 Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA 23777 | || |||||||| | || || ||| | || ||| | || || |||||| |||| Sbjct 197 AGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAA 256 Query 23778 AGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837 ||||| ||||| | || || || || | ||||| ||||||| || ||||| | Sbjct 257 AGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAA 316 Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TCTCGACCGTGACGCCGTTAAT 23895 |||| | |||||| | ||| || | || ||| || | || | | ||| ||||| | Sbjct 317 TACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAACTTGA--CCGTTGAC 374 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | || | || ||||||| | |||||||| || || || Sbjct 375 TCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTA 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744195261200