Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2084 123 5e-23 seq1567 84.2 4e-11 >seq2084 Length=1521 Score = 123 bits (136), Expect = 5e-23 Identities = 284/426 (67%), Gaps = 15/426 (4%) Strand=Plus/Plus Query 101936 GAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTATT 101995 ||||| |||||||| || | ||||| ||||| |||||| | ||||| || ||||| Sbjct 795 GAAGGTGTCTTCTTTTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAAAGAGGTATG 854 Query 101996 TTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGAC 102055 |||| ||| | |||| |||||| || | || | || ||||||||| | || |||| Sbjct 855 ATGCCCGGTTTGACCTTCTCCAACGAACTGATCTGCAGAGACGAAGGTTTGCACACCGAC 914 Query 102056 TTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAGAGAAAGGATTCTT 102115 ||||| || || |||| | |||| | | | | || || || | Sbjct 915 TTTGCCTGTTTGTTGTTCGCCCAC-------TTGAAAAACAAGCCGGACCCAGCCATCGT 967 Query 102116 G----AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCC 102171 |||| ||||| || |||||| || |||||| || || || || |||| Sbjct 968 CGAGAAAATCGTCACCGAGGCCGTCGAGATCGAACAAAGATACTTCCTAGACGCCTTGCC 1027 Query 102172 TGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGA 102231 || || | || |||||| | | ||||||| ||| ||| | || || || ||||| Sbjct 1028 AGTCGCCTTGCTAGGTATGAACGCCGACTTGATGAACCAATACGTCGAGTTCGTCGCAGA 1087 Query 102232 TAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATGTTACCAACCCCTTCCCA 102289 | ||| ||||| | | || || |||| | |||| || || |||||||||| Sbjct 1088 CAGACTTTTGGTCGCCTTCGGTAACAAGAA--GTACTACAAGGTCGACAACCCCTTCGAT 1145 Query 102290 TTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAG 102349 |||||||| || |||||| | | |||||||||||| || |||||||||||| |||| Sbjct 1146 TTCATGGAAAACATTTCCTTGGCCGGTAAGACCAACTTCTTCGAAAAGAGAGTCTCCGAC 1205 Query 102350 TATCAA 102355 || ||| Sbjct 1206 TACCAA 1211 >seq1567 Length=2367 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || || ||||||||||| || || || ||| || | ||| || |||||||| |||||| Sbjct 1535 CCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATG 1594 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGTTCCACA 94910 || || | | | | | ||||| || || || | ||| || |||| | || || Sbjct 1595 GAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGC-GTACCGGC 1653 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 |||||| |||||||||||||| ||||| || || | |||||| | | || || | Sbjct 1654 ATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTT 1713 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCAT 95018 | || || | ||| || |||||||| || | ||||||||||| Sbjct 1714 CAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCAT 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989533474005675