Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21]
3,985 sequences; 11,595,011 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1567 253 3e-62
seq3120 138 1e-27
seq2084 123 3e-23
seq3620 82.4 1e-10
>seq1567
Length=2367
Score = 253 bits (280), Expect = 3e-62
Identities = 747/1136 (66%), Gaps = 28/1136 (2%)
Strand=Plus/Plus
Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080
||||| || || | || ||||| || ||||| ||||||| ||||||||||||| |||
Sbjct 1007 TTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAAACCATG 1066
Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63140
|| || ||||| ||||| | || | || | || || | ||| || | |||||||
Sbjct 1067 AAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGGCGTACCATACCTTTTGAGCCTTG 1126
Query 63141 ATTATAGATTTGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198
|| | ||| || | | | |||||||||||| | ||||| | |||||| || |
Sbjct 1127 AT----GGTTT-TACCACGACCTTCTCTTTCGTAACGGGTATATAGCTCTTCGAATTCTT 1181
Query 63199 CTCCCCAAACATTGTCC-AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257
| |||||||| | |||| || || || || || || | | || | ||| | ||
Sbjct 1182 CACCCCAAACGTCGTCCAAACCTGGGGCA-GCACTTGGTGAGAATAAGGTCCAGGCCCCA 1240
Query 63258 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTT 63317
|| || | || || ||||| || ||||| |||||||| ||||| || | |||||||
Sbjct 1241 TCCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTT 1300
Query 63318 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63377
| | | ||| || || || | ||||| | | ||||| || | | || || | |
Sbjct 1301 GCACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCA 1360
Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437
||||| || |||||| | | ||| | | || || | ||||| || || || || | |
Sbjct 1361 TGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACG 1420
Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497
|| | || ||||| || | || | | ||| ||||| | |||||||| |||| |||
Sbjct 1421 TAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTG 1480
Query 63498 GTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCC 63556
||||| | ||||| || ||| ||||||||| | || ||| ||||| | || ||
Sbjct 1481 GTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGA-AGACCAACACCACC 1539
Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616
||| | || || || | || || ||| || ||||| || || ||||| ||| ||
Sbjct 1540 TGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTC 1599
Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676
|| ||||| || || ||||| ||||||||| || | | || || ||||||||
Sbjct 1600 GTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAA 1659
Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736
|| || || |||||||| || || || | || | | ||||| |||| | |
Sbjct 1660 TAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCAC 1719
Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796
|| || ||||| | ||||| |||| || |||||||| | || || || || |
Sbjct 1720 GGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACG 1779
Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856
||| | | || || || | | | || ||| || ||||| ||| ||||| |||||
Sbjct 1780 TTCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAA 1838
Query 63857 ATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATAT 63914
|||| |||| ||||| |||| ||||| | || |||| || ||| |||| || | |
Sbjct 1839 ATAGGTGTACTTGAAA--TCTCTGTCGTACACGATGGCCGAGTTCAGCGTATCTTTGTTT 1896
Query 63915 TTGTTAACTATATCCATGGTAATACTT-----GAAATAATCGGAGAATGTTTCCCATTTT 63969
| | || |||| || | |||| ||||| || || | ||| ||||| |
Sbjct 1897 TCCATGACAATAT---TG--TAGACTTCATCCGAAATCATAGGGGCATGCTTCCCCGTGG 1951
Query 63970 TAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCT 64029
||| || || ||| | || ||||| || || | || | ||| | || | ||
Sbjct 1952 CAGGGTTGACCCAGTCGTGCAAGTCCTCAATGACCTTGGAGAACTGCTTTGTGGTCTGCT 2011
Query 64030 TGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAG 64089
| |||| || || ||||| ||||| ||||| | |||| ||||| || || || |
Sbjct 2012 TATGTAAGTTGGAGATGGCAATTCTAGCGGCCAACGTGGCGTAATCAGGGTGCACCGTGG 2071
Query 64090 TACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64144
| || || || | | ||||| ||||| |||||| ||| || || || || ||
Sbjct 2072 T-CATGTATGCACATGTCTCGGCAGCCAGGTTGTCCAGTTCGACGGTGGTGACACC 2126
>seq3120
Length=488
Score = 138 bits (152), Expect = 1e-27
Identities = 315/469 (67%), Gaps = 4/469 (1%)
Strand=Plus/Plus
Query 63444 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63503
|| ||||| || | || | | ||| ||||| | ||||| || | || || |||||
Sbjct 1 GCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCA 60
Query 63504 GAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563
| || || || | |||||||| || ||| |||||| || || || || ||
Sbjct 61 GCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTT 120
Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623
|| || || || || ||| || || ||||| ||||| ||||| ||| |||||| ||
Sbjct 121 TTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTC 180
Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683
|| || ||| |||||| |||||||| | | || || || || ||||| ||
Sbjct 181 ATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTT 240
Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743
||||| ||||| ||||| ||||| || | | || || || || | ||| | ||
Sbjct 241 GGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCA 300
Query 63744 ATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63802
|| | || | ||||| |||| ||||| | ||| | | ||| || || | |||| |
Sbjct 301 ATGTTATCACCG-TGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGC 359
Query 63803 AATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63862
|| || ||| | | |||| ||||| || ||| |||||||||||||| || || |
Sbjct 360 AACTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACT 419
Query 63863 GTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
||| |||||| |||| || || | |||| | || || || ||||||||
Sbjct 420 GTACTGAAAA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTT 467
>seq2084
Length=1521
Score = 123 bits (136), Expect = 3e-23
Identities = 385/590 (65%), Gaps = 12/590 (2%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| |||||| || || ||| ||||| ||| |||||||| | || | |||||| ||
Sbjct 931 AACAACAAACAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAG 872
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || | |||||||| | || | || || | ||| || ||||| ||||| || |||
Sbjct 871 AAGGTCAAACCGGGCATCATACCTCTTTTCTTCAACCAGAAGATGGAGGCGAAGGACCCG 812
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG----C 33748
|||||||||| ||||| | | || || || | ||||| || || ||| || |
Sbjct 811 GAAAAGAAGACACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACC-GAACAGGGCATC 753
Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808
| ||| || ||||| | | ||||| |||||||||| | || || || ||
Sbjct 752 GGCGTCCTGGATCCATCTAAGGGCCCATTCGGCCTTCTCGCAGATTTCTGGGATGGTGTC 693
Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868
||||| || || | | | |||| || || || | || || |||||||| |
Sbjct 692 GATGGCGTTGAACAAGAACTCGCTTTCCTTGGGGTCCTTGATGTAGGTGTCGATCAACAA 633
Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928
|| |||| || || ||||| || || || ||||| || |||||||||| | ||
Sbjct 632 GGAGTAGGTTTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAACTCTTGGC 573
Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCA 33986
||| | ||||| || || || | || ||||| | || ||||| || || || ||
Sbjct 572 CTCCGGGATCTGGACCTCGGTGGAGAA--GTTCTCGACCAAGTTTTCGTTGACGATACCG 515
Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GTT 34043
|| ||| || || || || | || || || || ||||| | | || ||
Sbjct 514 TCGGAGGCGGCGAAGAAGGCAAGCACTCTGGAGATGAAGAATCTTTCGTTTTCGTTCATT 455
Query 34044 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103
|| ||||| || | ||| || || || | || | ||| || | ||||| || ||
Sbjct 454 CTGTTGTTCCAGTCGTGGATGTCCTTGGACAAGTCGATTTCCTCGGCAGTCCAGAAGGAG 395
Query 34104 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153
||||| || || ||| | |||||| || || || ||||| |||||
Sbjct 394 GCCTCGGCACGCTTGTACGATTGCCAGATCTCGTGGTACTGGATGGGGAA 345
>seq3620
Length=287
Score = 82.4 bits (90), Expect = 1e-10
Identities = 105/140 (75%), Gaps = 5/140 (4%)
Strand=Plus/Plus
Query 62171 ATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGT 62230
||||| ||| || |||||||||| | | | | ||| || ||||| || ||||| ||
Sbjct 63 ATTCAAAGAATGGGATTGATCGATGTAAACGGCACGGTCGGCTGCCATGTTAATGATAGT 122
Query 62231 CTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTT- 62288
|||||||| ||||||||||| ||| ||||| || || | ||| |||| ||| | ||||
Sbjct 123 CTTTTGTGAAATTTCCCAAACAGTCTTATACAAATCTTTCAAT-TCTTGTGGTACGTTTG 181
Query 62289 GTATTC--TGAATGGATCCA 62306
||| | |||||||| |||
Sbjct 182 GTAAACCTTGAATGGAACCA 201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629786227210800
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