Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1567 253 3e-62 seq3120 138 1e-27 seq2084 123 3e-23 seq3620 82.4 1e-10 >seq1567 Length=2367 Score = 253 bits (280), Expect = 3e-62 Identities = 747/1136 (66%), Gaps = 28/1136 (2%) Strand=Plus/Plus Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 ||||| || || | || ||||| || ||||| ||||||| ||||||||||||| ||| Sbjct 1007 TTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAAACCATG 1066 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63140 || || ||||| ||||| | || | || | || || | ||| || | ||||||| Sbjct 1067 AAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGGCGTACCATACCTTTTGAGCCTTG 1126 Query 63141 ATTATAGATTTGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 || | ||| || | | | |||||||||||| | ||||| | |||||| || | Sbjct 1127 AT----GGTTT-TACCACGACCTTCTCTTTCGTAACGGGTATATAGCTCTTCGAATTCTT 1181 Query 63199 CTCCCCAAACATTGTCC-AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257 | |||||||| | |||| || || || || || || | | || | ||| | || Sbjct 1182 CACCCCAAACGTCGTCCAAACCTGGGGCA-GCACTTGGTGAGAATAAGGTCCAGGCCCCA 1240 Query 63258 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTT 63317 || || | || || ||||| || ||||| |||||||| ||||| || | ||||||| Sbjct 1241 TCCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTT 1300 Query 63318 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63377 | | | ||| || || || | ||||| | | ||||| || | | || || | | Sbjct 1301 GCACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCA 1360 Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437 ||||| || |||||| | | ||| | | || || | ||||| || || || || | | Sbjct 1361 TGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACG 1420 Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497 || | || ||||| || | || | | ||| ||||| | |||||||| |||| ||| Sbjct 1421 TAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTG 1480 Query 63498 GTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCC 63556 ||||| | ||||| || ||| ||||||||| | || ||| ||||| | || || Sbjct 1481 GTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGA-AGACCAACACCACC 1539 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 ||| | || || || | || || ||| || ||||| || || ||||| ||| || Sbjct 1540 TGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTC 1599 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 || ||||| || || ||||| ||||||||| || | | || || |||||||| Sbjct 1600 GTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAA 1659 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 || || || |||||||| || || || | || | | ||||| |||| | | Sbjct 1660 TAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCAC 1719 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || || ||||| | ||||| |||| || |||||||| | || || || || | Sbjct 1720 GGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACG 1779 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 ||| | | || || || | | | || ||| || ||||| ||| ||||| ||||| Sbjct 1780 TTCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAA 1838 Query 63857 ATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATAT 63914 |||| |||| ||||| |||| ||||| | || |||| || ||| |||| || | | Sbjct 1839 ATAGGTGTACTTGAAA--TCTCTGTCGTACACGATGGCCGAGTTCAGCGTATCTTTGTTT 1896 Query 63915 TTGTTAACTATATCCATGGTAATACTT-----GAAATAATCGGAGAATGTTTCCCATTTT 63969 | | || |||| || | |||| ||||| || || | ||| ||||| | Sbjct 1897 TCCATGACAATAT---TG--TAGACTTCATCCGAAATCATAGGGGCATGCTTCCCCGTGG 1951 Query 63970 TAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCT 64029 ||| || || ||| | || ||||| || || | || | ||| | || | || Sbjct 1952 CAGGGTTGACCCAGTCGTGCAAGTCCTCAATGACCTTGGAGAACTGCTTTGTGGTCTGCT 2011 Query 64030 TGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAG 64089 | |||| || || ||||| ||||| ||||| | |||| ||||| || || || | Sbjct 2012 TATGTAAGTTGGAGATGGCAATTCTAGCGGCCAACGTGGCGTAATCAGGGTGCACCGTGG 2071 Query 64090 TACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64144 | || || || | | ||||| ||||| |||||| ||| || || || || || Sbjct 2072 T-CATGTATGCACATGTCTCGGCAGCCAGGTTGTCCAGTTCGACGGTGGTGACACC 2126 >seq3120 Length=488 Score = 138 bits (152), Expect = 1e-27 Identities = 315/469 (67%), Gaps = 4/469 (1%) Strand=Plus/Plus Query 63444 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63503 || ||||| || | || | | ||| ||||| | ||||| || | || || ||||| Sbjct 1 GCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCA 60 Query 63504 GAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563 | || || || | |||||||| || ||| |||||| || || || || || Sbjct 61 GCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTT 120 Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623 || || || || || ||| || || ||||| ||||| ||||| ||| |||||| || Sbjct 121 TTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTC 180 Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683 || || ||| |||||| |||||||| | | || || || || ||||| || Sbjct 181 ATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTT 240 Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 ||||| ||||| ||||| ||||| || | | || || || || | ||| | || Sbjct 241 GGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCA 300 Query 63744 ATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63802 || | || | ||||| |||| ||||| | ||| | | ||| || || | |||| | Sbjct 301 ATGTTATCACCG-TGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGC 359 Query 63803 AATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63862 || || ||| | | |||| ||||| || ||| |||||||||||||| || || | Sbjct 360 AACTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACT 419 Query 63863 GTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 ||| |||||| |||| || || | |||| | || || || |||||||| Sbjct 420 GTACTGAAAA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTT 467 >seq2084 Length=1521 Score = 123 bits (136), Expect = 3e-23 Identities = 385/590 (65%), Gaps = 12/590 (2%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| |||||| || || ||| ||||| ||| |||||||| | || | |||||| || Sbjct 931 AACAACAAACAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAG 872 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | |||||||| | || | || || | ||| || ||||| ||||| || ||| Sbjct 871 AAGGTCAAACCGGGCATCATACCTCTTTTCTTCAACCAGAAGATGGAGGCGAAGGACCCG 812 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG----C 33748 |||||||||| ||||| | | || || || | ||||| || || ||| || | Sbjct 811 GAAAAGAAGACACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACC-GAACAGGGCATC 753 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 | ||| || ||||| | | ||||| |||||||||| | || || || || Sbjct 752 GGCGTCCTGGATCCATCTAAGGGCCCATTCGGCCTTCTCGCAGATTTCTGGGATGGTGTC 693 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 ||||| || || | | | |||| || || || | || || |||||||| | Sbjct 692 GATGGCGTTGAACAAGAACTCGCTTTCCTTGGGGTCCTTGATGTAGGTGTCGATCAACAA 633 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 || |||| || || ||||| || || || ||||| || |||||||||| | || Sbjct 632 GGAGTAGGTTTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAACTCTTGGC 573 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCA 33986 ||| | ||||| || || || | || ||||| | || ||||| || || || || Sbjct 572 CTCCGGGATCTGGACCTCGGTGGAGAA--GTTCTCGACCAAGTTTTCGTTGACGATACCG 515 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GTT 34043 || ||| || || || || | || || || || ||||| | | || || Sbjct 514 TCGGAGGCGGCGAAGAAGGCAAGCACTCTGGAGATGAAGAATCTTTCGTTTTCGTTCATT 455 Query 34044 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 || ||||| || | ||| || || || | || | ||| || | ||||| || || Sbjct 454 CTGTTGTTCCAGTCGTGGATGTCCTTGGACAAGTCGATTTCCTCGGCAGTCCAGAAGGAG 395 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||||| || || ||| | |||||| || || || ||||| ||||| Sbjct 394 GCCTCGGCACGCTTGTACGATTGCCAGATCTCGTGGTACTGGATGGGGAA 345 >seq3620 Length=287 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 62171 ATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGT 62230 ||||| ||| || |||||||||| | | | | ||| || ||||| || ||||| || Sbjct 63 ATTCAAAGAATGGGATTGATCGATGTAAACGGCACGGTCGGCTGCCATGTTAATGATAGT 122 Query 62231 CTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTT- 62288 |||||||| ||||||||||| ||| ||||| || || | ||| |||| ||| | |||| Sbjct 123 CTTTTGTGAAATTTCCCAAACAGTCTTATACAAATCTTTCAAT-TCTTGTGGTACGTTTG 181 Query 62289 GTATTC--TGAATGGATCCA 62306 ||| | |||||||| ||| Sbjct 182 GTAAACCTTGAATGGAACCA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629786227210800