Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1567 214 2e-50 seq3120 127 3e-24 >seq1567 Length=2367 Score = 214 bits (236), Expect = 2e-50 Identities = 736/1135 (65%), Gaps = 26/1135 (2%) Strand=Plus/Plus Query 65814 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 65873 |||||||| || | || ||||| || ||||| ||||||| ||||||||||||| ||| Sbjct 1007 TTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAAACCATG 1066 Query 65874 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 65933 || || ||||| ||||| | || | || | || || | ||| || | ||||||| Sbjct 1067 AAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGGCGTACCATACCTTTTGAGCCTTG 1126 Query 65934 ATTATAGATTTGTATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGT 65991 || | ||| || | | |||||||||||| | ||||| | |||||| || | Sbjct 1127 AT----GGTTT-TACCACGACCTTCTCTTTCGTAACGGGTATATAGCTCTTCGAATTCTT 1181 Query 65992 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 66051 | |||||||| | |||||| || || || || | | || | ||| | || | Sbjct 1182 CACCCCAAACGTCGTCCAAACCTGGGGCAGCACTTGGTGAGAATAAGGTCCAGGCCCCAT 1241 Query 66052 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGG 66111 | || | || || ||||| || ||||| |||||||| ||||| || |||||||| | Sbjct 1242 CCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTTG 1301 Query 66112 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAAT 66171 | | ||| || || || | ||||| | | ||||| || | | || || || Sbjct 1302 CACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCAT 1361 Query 66172 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 66231 |||| || |||||| | | ||| | | || || | ||||| || || || || | || Sbjct 1362 GCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGT 1421 Query 66232 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 66291 | | || ||||| || | || | | ||| ||||| | || || || ||||| |||| Sbjct 1422 AACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTGG 1481 Query 66292 TCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT-TGATAGACCTATTCCCCCT 66350 | || | ||||| || | | ||||||||| | || ||| ||||| | || ||| Sbjct 1482 TACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGA-AGACCAACACCACCT 1540 Query 66351 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 66410 || | || || || | || || ||| || || || || || || || || || Sbjct 1541 GCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTCG 1600 Query 66411 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 66470 ||| ||||| || || ||||| ||||||||| || | || || ||||||||| Sbjct 1601 TCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAAT 1660 Query 66471 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 66530 | || || |||||||| || || || | || | | ||||| |||| | | Sbjct 1661 AGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCACG 1720 Query 66531 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 66590 || || ||||| | ||||| |||| || |||||||| | || || || || | | Sbjct 1721 GACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACGT 1780 Query 66591 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 66650 || | | | || || | | | || ||| || ||||| ||| ||||| |||||| Sbjct 1781 TCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAAA 1839 Query 66651 TAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 66708 ||| |||| ||||| |||| ||||| | || ||||||| || |||| || | || Sbjct 1840 TAGGTGTACTTGAAA--TCTCTGTCGTACACGATGGCCGAGTTCAGCGTATCTTTGTTTT 1897 Query 66709 TGTTAACTACATCCATGGTAATACTT-----GAAATAATCGGAGAATGTTTCCCATTTTT 66763 | || | || || | |||| ||||| || || | ||| ||||| | Sbjct 1898 CCATGACAATAT---TG--TAGACTTCATCCGAAATCATAGGGGCATGCTTCCCCGTGGC 1952 Query 66764 AGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTT 66823 ||| ||||| ||| | || ||||| || || | || | ||| | || | || Sbjct 1953 AGGGTTGACCCAGTCGTGCAAGTCCTCAATGACCTTGGAGAACTGCTTTGTGGTCTGCTT 2012 Query 66824 GTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGT 66883 |||| || || | ||| ||||||||||| | |||| ||||| || || || || Sbjct 2013 ATGTAAGTTGGAGATGGCAATTCTAGCGGCCAACGTGGCGTAATCAGGGTGCACCGTGGT 2072 Query 66884 ACAAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 66937 || || || | | ||||| ||||| |||||| ||| || || || || || Sbjct 2073 -CATGTATGCACATGTCTCGGCAGCCAGGTTGTCCAGTTCGACGGTGGTGACACC 2126 >seq3120 Length=488 Score = 127 bits (140), Expect = 3e-24 Identities = 315/470 (67%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 66296 || ||||| || | || | | ||| ||||| | || || || || || || || || Sbjct 1 GCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCA 60 Query 66297 GAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 | || || || |||||||||| || ||| |||||| || || || || || Sbjct 61 GCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTT 120 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 || || || || || ||| || || || || ||||| || || || ||||||| || Sbjct 121 TTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTC 180 Query 66417 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 66476 || || ||| |||||| |||||||| | || || || || ||||| || Sbjct 181 ATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTT 240 Query 66477 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 66536 ||||| ||||| ||||| ||||| || | | || || || || | ||| | || Sbjct 241 GGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCA 300 Query 66537 ATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 66595 || | || | ||||| |||| ||||| | ||| | | ||| || || | |||| | Sbjct 301 ATGTTATCACCG-TGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGC 359 Query 66596 GATCTTGTT-GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 | |||| ||| | | |||| ||||| || ||| |||||||||||||| || || Sbjct 360 AA-CTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAAC 418 Query 66655 TGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 |||| |||||| |||| || || | |||| | ||||| ||||||||||| Sbjct 419 TGTACTGAAAA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTT 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658140014767400