Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1567 203 4e-47 seq3120 116 5e-21 seq3620 84.2 3e-11 >seq1567 Length=2367 Score = 203 bits (224), Expect = 4e-47 Identities = 692/1068 (65%), Gaps = 18/1068 (2%) Strand=Plus/Plus Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 |||||||| || | || ||||| || ||||| ||||||| ||||||||||||| || Sbjct 1007 TTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAAACCATG 1066 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 71895 || || ||||| ||||| | || | || | || || | ||| || | ||||||| Sbjct 1067 AAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGGCGTACCATACCTTTTGAGCCTTG 1126 Query 71896 ATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 || | || | | | |||||||||||| | ||||||| |||||| || || Sbjct 1127 ATGGTTTTACCACGACC----TTCTCTTTCGTAACGGGTATATAGCTCTTCGAATTCTTC 1182 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||||| | | ||| || || || || | || | | || | ||| | ||||| Sbjct 1183 ACCCCAAACGTCGTCCAAACCTGGGGCAGCACTTGGTGAGAATAAGGTCCAGGCCCCATC 1242 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 || | || || ||||| || ||||| |||||||| ||||| || | |||||| | Sbjct 1243 CTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTTGC 1302 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 | | || || || || | ||||| | | ||||| || | | || || | ||| Sbjct 1303 ACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCATG 1362 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| || |||||| | | ||| | | || || | ||||| || || || || | ||| Sbjct 1363 CCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGTA 1422 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 | || ||||| || | || | | ||| ||||| | || || || | ||| ||||| Sbjct 1423 ACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTGGT 1482 Query 72255 CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT-TGATAGACCTATTCCCCCTG 72313 || | ||||| || ||| |||||||||| | || ||| ||||| | || |||| Sbjct 1483 ACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGA-AGACCAACACCACCTG 1541 Query 72314 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 72373 | | || || || | || || ||| || || || || || || || || || | Sbjct 1542 CAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTCGT 1601 Query 72374 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 72433 || ||||| || || ||||| ||||||||| || | || || |||||||||| Sbjct 1602 CCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAATA 1661 Query 72434 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTG 72493 || || |||||||| || || || | |||| | ||||| |||| | | | Sbjct 1662 GTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCACGG 1721 Query 72494 ATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTT 72553 | || ||||| | || || |||| || |||||||| | || ||| || || | || Sbjct 1722 ACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACGTT 1781 Query 72554 CAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 72613 | | | | | || | | | || ||| || ||||| ||| ||||| ||||||| Sbjct 1782 CGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAAAT 1840 Query 72614 AGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 || |||| ||||| |||| ||||| | || |||| || || |||| || | || Sbjct 1841 AGGTGTACTTGAAA--TCTCTGTCGTACACGATGGCCGAGTTCAGCGTATCTTTGTTTTC 1898 Query 72672 GTTAACTATATCCATGGTGA-TACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGG 72728 | || |||| || || | | | ||||| || || | ||| ||||| | ||| Sbjct 1899 CATGACAATAT---TGTAGACTTCATCCGAAATCATAGGGGCATGCTTCCCCGTGGCAGG 1955 Query 72729 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 72788 || || ||| | || ||||| || || | || | ||| | || | ||| || Sbjct 1956 GTTGACCCAGTCGTGCAAGTCCTCAATGACCTTGGAGAACTGCTTTGTGGTCTGCTTATG 2015 Query 72789 TAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || || | ||| ||||| ||||| | |||| ||||| || || Sbjct 2016 TAAGTTGGAGATGGCAATTCTAGCGGCCAACGTGGCGTAATCAGGGTG 2063 >seq3120 Length=488 Score = 116 bits (128), Expect = 5e-21 Identities = 266/394 (68%), Gaps = 10/394 (3%) Strand=Plus/Plus Query 72277 GCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336 |||||||| ||| ||| |||||| || || || || |||| || || || || ||| Sbjct 79 GCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACAT 138 Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 || || || || ||||| || || || ||||||| |||| || ||| |||||| Sbjct 139 TCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAG 198 Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 |||||||| | || || || || ||||| || ||||| ||||| ||||| Sbjct 199 GAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAG 258 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGT 72513 ||||| |||| | || || || || | ||| | || || ||| | ||| Sbjct 259 TATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGA--- 315 Query 72514 ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT-AT 72572 || |||| ||||| | ||| | | || || || | |||| | | |||| || | Sbjct 316 ATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAA-CTTGACCGTTGAC 374 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTCTC 72631 | |||| ||||| || ||| |||||||||||||| || || |||| |||||| |||| Sbjct 375 TCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTGTACTGAAAA-TCTC 433 Query 72632 GTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 || || | |||| | || || ||||||||||| Sbjct 434 TGTCATAGACAATAGCTGAGTTTAGTTTATCCTT 467 >seq3620 Length=287 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/201 (72%), Gaps = 11/201 (5%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTATGTGAATA 70926 |||| ||||| ||||||||||| ||||| || || | | || || | ||||| Sbjct 5 TCCAACCGTAGAAATGCATACTTGTTAGCTTACCCATGGTTGGGGCACGCAA---GAATA 61 Query 70927 --TTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCG 70984 |||| || || |||||||||| | | | | ||| || ||||| || ||||| | Sbjct 62 AATTCAAAGAATGGGATTGATCGATGTAAACGGCACGGTCGGCTGCCATGTTAATGATAG 121 Query 70985 TCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTT 71043 ||||||||| ||||||||||| ||| ||||| || || | ||| |||| ||| | |||| Sbjct 122 TCTTTTGTGAAATTTCCCAAACAGTCTTATACAAATCTTTCAAT-TCTTGTGGTACGTTT 180 Query 71044 -GTATTC--TGAATGGATCCA 71061 ||| | |||||||| ||| Sbjct 181 GGTAAACCTTGAATGGAACCA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671105768878600