Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1567 237 2e-57 seq3120 136 5e-27 seq2084 132 6e-26 seq3620 82.4 1e-10 >seq1567 Length=2367 Score = 237 bits (262), Expect = 2e-57 Identities = 741/1133 (65%), Gaps = 22/1133 (2%) Strand=Plus/Plus Query 62970 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63029 ||||| || || | || ||||| || ||||| ||||||| ||||||||||||| ||| Sbjct 1007 TTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAAACCATG 1066 Query 63030 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63089 || || ||||| ||||| | || | || | || || | ||| || | ||||||| Sbjct 1067 AAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGGCGTACCATACCTTTTGAGCCTTG 1126 Query 63090 ATTATAGATTTGTATCTC--CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGT 63147 || | ||| || | | | |||||||||||| | ||||| | |||||| || | Sbjct 1127 AT----GGTTT-TACCACGACCTTCTCTTTCGTAACGGGTATATAGCTCTTCGAATTCTT 1181 Query 63148 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63207 | |||||||| | |||||| || || || || | | || | ||| | || | Sbjct 1182 CACCCCAAACGTCGTCCAAACCTGGGGCAGCACTTGGTGAGAATAAGGTCCAGGCCCCAT 1241 Query 63208 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 63267 | || | || || ||||| || ||||| |||||||| ||||| || | |||||| | Sbjct 1242 CCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTTG 1301 Query 63268 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63327 | | ||| || || || | ||||| | | ||||| || | | || || | || Sbjct 1302 CACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCAT 1361 Query 63328 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63387 |||| || |||||| | | ||| | | || || | ||||| || || || || | || Sbjct 1362 GCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGT 1421 Query 63388 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63447 | | || ||||| || | || | | ||| ||||| | |||||||| |||| |||| Sbjct 1422 AACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTGG 1481 Query 63448 TACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCT 63506 |||| | ||||| || ||| ||||||||| | || ||| ||||| | || ||| Sbjct 1482 TACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGA-AGACCAACACCACCT 1540 Query 63507 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCA 63566 || | || || || | || || ||| || ||||| || ||||| || ||| || Sbjct 1541 GCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTCG 1600 Query 63567 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 63626 || ||||| || || ||||| ||||||||| || | || || ||||||||| Sbjct 1601 TCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAAT 1660 Query 63627 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63686 | || || |||||||| || || || | || | | ||||| |||| | | Sbjct 1661 AGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCACG 1720 Query 63687 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63746 || || ||||| | ||||| |||| || |||||||| | || || || || | | Sbjct 1721 GACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACGT 1780 Query 63747 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63806 || | | | || || | | | || ||| || ||||| ||| ||||| |||||| Sbjct 1781 TCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAAA 1839 Query 63807 TAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 63864 ||| |||| ||||| |||| ||||| | || ||||||| || |||| || | || Sbjct 1840 TAGGTGTACTTGAAA--TCTCTGTCGTACACGATGGCCGAGTTCAGCGTATCTTTGTTTT 1897 Query 63865 TGTTAACTATATCCATGGTGA-TACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAG 63921 | || |||| || || | | | ||||| || || | ||| ||||| | || Sbjct 1898 CCATGACAATAT---TGTAGACTTCATCCGAAATCATAGGGGCATGCTTCCCCGTGGCAG 1954 Query 63922 GATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGT 63981 | || || ||| | || ||||| || || | || | ||| | || | ||| | Sbjct 1955 GGTTGACCCAGTCGTGCAAGTCCTCAATGACCTTGGAGAACTGCTTTGTGGTCTGCTTAT 2014 Query 63982 GTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTAC 64041 ||| || || | ||| ||||| ||||| | |||| ||||| || || || || | Sbjct 2015 GTAAGTTGGAGATGGCAATTCTAGCGGCCAACGTGGCGTAATCAGGGTGCACCGTGGT-C 2073 Query 64042 AAGT-GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64093 | || || | | ||||| ||||| |||||| ||| || || || || || Sbjct 2074 ATGTATGCACATGTCTCGGCAGCCAGGTTGTCCAGTTCGACGGTGGTGACACC 2126 >seq3120 Length=488 Score = 136 bits (150), Expect = 5e-27 Identities = 317/470 (67%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63452 || ||||| || | || | | ||| ||||| | ||||| || | || || ||||| Sbjct 1 GCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCA 60 Query 63453 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 | || || || | |||||||| || ||| |||||| || || || || || Sbjct 61 GCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTT 120 Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572 || || || || || ||| || || ||||| |||||||| || ||| |||||| || Sbjct 121 TTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTC 180 Query 63573 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63632 || || ||| |||||| |||||||| | || || || || ||||| || Sbjct 181 ATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTT 240 Query 63633 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63692 ||||| ||||| ||||| ||||| || | | || || || || | ||| | || Sbjct 241 GGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCA 300 Query 63693 ATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63751 || | || | ||||| |||| ||||| | ||| | | ||| || || | |||| | Sbjct 301 ATGTTATCACCG-TGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGC 359 Query 63752 GATCTTGTT-GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 | |||| ||| | | |||| ||||| || ||| |||||||||||||| || || Sbjct 360 AA-CTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAAC 418 Query 63811 TGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 |||| |||||| |||| || || | |||| | ||||| ||||||||||| Sbjct 419 TGTACTGAAAA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTT 467 >seq2084 Length=1521 Score = 132 bits (146), Expect = 6e-26 Identities = 388/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| |||||| || || ||| ||||| ||| |||||||| | || ||||||||||| Sbjct 931 AACAACAAACAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAG 872 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | |||||||| | || | || || | ||| || ||||| ||||| || || Sbjct 871 AAGGTCAAACCGGGCATCATACCTCTTTTCTTCAACCAGAAGATGGAGGCGAAGGACCCG 812 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG----C 33470 |||||||||| ||||| | | || || || | ||||| || || ||| || | Sbjct 811 GAAAAGAAGACACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACC-GAACAGGGCATC 753 Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 | ||| || ||||| | | ||||| |||||||||| | || || || || Sbjct 752 GGCGTCCTGGATCCATCTAAGGGCCCATTCGGCCTTCTCGCAGATTTCTGGGATGGTGTC 693 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||||| || || | | | |||| || || || | || || |||||||| | Sbjct 692 GATGGCGTTGAACAAGAACTCGCTTTCCTTGGGGTCCTTGATGTAGGTGTCGATCAACAA 633 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 || |||| || || ||||| || || || ||||| || |||||||||| | || Sbjct 632 GGAGTAGGTTTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAACTCTTGGC 573 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTC-CG-CCAAATTTTCATTCACTATTCCG 33708 ||| | ||||| || || || | || |||| || |||| ||||| || || || ||| Sbjct 572 CTCCGGGATCTGGACCTCGGTGGAGAA--GTTCTCGACCAAGTTTTCGTTGACGATACCG 515 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GTT 33765 || ||| || || || || | || || || || ||||| | | || || Sbjct 514 TCGGAGGCGGCGAAGAAGGCAAGCACTCTGGAGATGAAGAATCTTTCGTTTTCGTTCATT 455 Query 33766 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825 || ||||| || | ||| || || || | || | ||| || | ||||| || || Sbjct 454 CTGTTGTTCCAGTCGTGGATGTCCTTGGACAAGTCGATTTCCTCGGCAGTCCAGAAGGAG 395 Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||||| || || ||| | |||||| || | || ||||| ||||| Sbjct 394 GCCTCGGCACGCTTGTACGATTGCCAGATCTCGTGGTACTGGATGGGGAA 345 >seq3620 Length=287 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 62120 ATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGT 62179 ||||| ||| || |||||||||| | | | | ||| || ||||| || ||||| || Sbjct 63 ATTCAAAGAATGGGATTGATCGATGTAAACGGCACGGTCGGCTGCCATGTTAATGATAGT 122 Query 62180 CTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTT- 62237 |||||||| ||||||||||| ||| ||||| || || | ||| |||| ||| | |||| Sbjct 123 CTTTTGTGAAATTTCCCAAACAGTCTTATACAAATCTTTCAAT-TCTTGTGGTACGTTTG 181 Query 62238 GTATTC--TGAATGGATCCA 62255 ||| | |||||||| ||| Sbjct 182 GTAAACCTTGAATGGAACCA 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622916169442600