Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2938 140 2e-28 seq3059 104 2e-17 seq1250 86.0 4e-12 >seq2938 Length=607 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 267 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 266 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 232 >seq3059 Length=527 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 465 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 406 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 405 GCCAATATTTAGCTTTA 389 >seq1250 Length=3113 Score = 86.0 bits (94), Expect = 4e-12 Identities = 202/295 (68%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 6199 CGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 |||||||||| ||||||||||| | ||| || |||||||| |||| || ||||||| Sbjct 1807 CGTTCTACCGTTACAAAATGCCTCCAATCCAGGCTAAGGTCGAAGGTAGAGGTAACGGTA 1748 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC-GCCCTGCCACC 6317 | ||||| | || | ||| || |||| |||| | ||| | | || | |||||| | Sbjct 1747 TCAAAACAGCAATCCTGAACGTGGCTGACATCGCCCATGCG-TTGAACAGACCTGCCCCA 1689 Query 6318 TAC-CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA-CAAAA 6375 ||| || | || || ||||| | |||||| || ||||| || | | | || | | | Sbjct 1688 TACATCGTC-AAGTACTTCGGTTTCGAACTGGGTGCTCAAAC-CTCTATCTCCATCGACA 1631 Query 6376 ACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACG 6435 | || || | | |||||||| ||| | |||| ||| |||| ||| | | |||| Sbjct 1630 AAGATCGTTATTTGGTTAACGGTGTTCATGAACCTGCTAAGTTGCAAGACGTGTTGGACG 1571 Query 6436 GCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA--TGCGATAACCCGGAGACCGAG 6488 | || || || |||||| || ||| |||| || | || || || |||||| Sbjct 1570 GGTTCATCAACAGGTTTGTTCTTTGT--GGAAGTTGTAAGAATCCAGAAACCGAG 1518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334930932556535