Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1567 226 4e-54 seq3120 127 3e-24 >seq1567 Length=2367 Score = 226 bits (250), Expect = 4e-54 Identities = 1356/2145 (63%), Gaps = 66/2145 (3%) Strand=Plus/Plus Query 61846 CAATG-TGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 61904 ||||| | |||||||||| || || |||| || || | | |||||||| ||||| | Sbjct 6 CAATGGTAAATTGAATGGCTGCAGAAGCGGCTTGTGTTCTCAAGTAGTACATACCCGTCT 65 Query 61905 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCG-GATC 61962 | | ||| |||| ||||| ||||||||||| || | ||| || | | ||| Sbjct 66 TCAAACCCTTCTTCCAACCGTAGAAATGCATACTTGTAATTTTACCCATTGATGGTGAT- 124 Query 61963 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62022 || || | ||||| || || |||||| ||| | | || |||||||| Sbjct 125 TG-TAGGAACAAATTCAAGGAGTGGGATTGATCAATGTAAATGGAACGATCAGCAGCCAT 183 Query 62023 TTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTC 62082 || ||||| |||||||| | |||||||| | ||||||||| | || | ||||| Sbjct 184 GTTGATAATAGTCTTTTGAGAGATTTCCCAGACAGTTTTATATAGATCTTTCAAATCTTG 243 Query 62083 TGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTGCCATAATCC--TATTCTTG-AT 62136 |||| ||||| || | |||||| ||| | | ||||| |||| || || Sbjct 244 AGGAACGTTTGGTAAATCTTTAATGGAGCCATTTTGAG---TAATCAAATATTGTTTCAT 300 Query 62137 CTCATCATTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62195 ||||| ||| ||| | ||| |||| | | || | | ||||| || |||| Sbjct 301 ACTATCATCCCA-AATGCCCAGATCGACTAAATCACGTAGTAAGTATGGATTGACGACTT 359 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 | ||||| ||||| || || | |||| ||| || || || ||||| | | ||| Sbjct 360 GGAATTCACCAGATAAGACACGACGAGAGTACATGTTTGAAGTGACTGGTTCGAAACACT 419 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 |||| | || | |||||| | ||||| || || ||||| || |||| |||| | Sbjct 420 CATTGTACCCAAGAATTTGGGATGTTGAAGCGGTTGGCATTGGGGCCATGGTTAAAGAGT 479 Query 62316 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 62375 |||| | || | | | || | | || | || ||||||| ||| | | | | Sbjct 480 TTCTTAACCCATGTTTCACAATGTCCTTCTTCAAAGTGTCCCAATCCCACATGCCAAATG 539 Query 62376 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATG 62435 | | | |||| |||||| ||| ||| || ||| || | | Sbjct 540 GCTTAGCATTCCACATGTCGAACTGTAAAATACCCTTAGAGGCAGGAGAGCCTTCAAAAG 599 Query 62436 TATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAA 62495 | ||| |||||||| | ||||| |||||| || || | | | | | |||| Sbjct 600 TGGAATATTTACCTTCCTTTTGAGCTAACTCACAAGAAGCTTCAAGGGTAGCATGGTAAA 659 Query 62496 TGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTA 62555 | |||||||| || | ||||| || ||| |||| | |||||||| || | Sbjct 660 TAGTTTCGAAAATTTGTTTATTAAGTATTTGAGCTTTTTCACATTCAAATGGTAAACGCA 719 Query 62556 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 | ||| | | || || || |||||||| || | | |||||||||||| || | | Sbjct 720 GCATCATATAAGTATCGGCCAAACCTTGAACCCCCAGGGCAATAGGTCTATGTTTCATGT 779 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 ||||| || ||| ||||| | |||||||| ||| || || | | |||| | | || Sbjct 780 TAGAGTTTCTAGCCTCTGGCACTGGATAATAGTTACGGTCGATGACTCTATTCA-AGTTA 838 Query 62676 TGACA-ATTACTTTGACCACATCCT-TCAGTTTGAGAAAATCAAA-TCGCC-------CA 62725 ||| || ||||| | | || | | | || |||| | | ||||| || Sbjct 839 TGAGTGATGACTTTAGCAATGTCATGTAAACTTTGGAAATTGTAGGTCGCCGTTTTACCA 898 Query 62726 TCT-----ATTACAAAC--ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACC 62776 ||| | | ||| ||| | | |||| || || | ||||||||| || Sbjct 899 TCTTCCGAAGTCTCAACGAATGCTGGTAGAGCAATGGAAGCTAAATTACAAACAGCAGTT 958 Query 62777 TCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATTACTAC-ACTTGATGGTTC 62834 |||| | | ||| | | || || || ||| || || | |||||||| | Sbjct 959 TCATCTGGGGAAGAATACTCGACGATTTCGCAACACAAGTTTG--ACGATTTGATGGTAC 1016 Query 62835 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 62894 | | || ||||| || ||||| ||||||| ||||||||||||| ||||| || |||| Sbjct 1017 CCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAAACCATGAAGGGTGTAC 1076 Query 62895 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 62954 | ||||| | || | || | || || | ||| || | ||||||| || | || Sbjct 1077 CGGTTTCTGTTTGTGCTTGCAAGATGGCGTACCATACCTTTTGAGCCTTGAT----GGTT 1132 Query 62955 TGTATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63012 | || | | |||||||||||| | ||||| | |||||| || || |||||||| Sbjct 1133 T-TACCACGACCTTCTCTTTCGTAACGGGTATATAGCTCTTCGAATTCTTCACCCCAAAC 1191 Query 63013 ATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63072 | ||||| || || || || | | || | ||| | || || || | || Sbjct 1192 GTCGTCCAAACCTGGGGCAGCACTTGGTGAGAATAAGGTCCAGGCCCCATCCTCTTCGAC 1251 Query 63073 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63132 || ||||| || ||||| |||||||| ||||| || | |||||| | | | ||| Sbjct 1252 ACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTC 1311 Query 63133 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63192 || || || | ||||| | | ||||| || | | || || | |||||| || || Sbjct 1312 TTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCATGCCATGGCTC 1371 Query 63193 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63252 |||| | | ||| | | || || | ||||| || || || || | ||| | || || Sbjct 1372 CAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGTAACGTGCAGT 1431 Query 63253 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGAT 63312 ||| || | || | | ||| ||||| | || || || ||||| ||||| |||| || Sbjct 1432 GTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTGGTACCTGCAAT 1491 Query 63313 ATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAG 63371 ||| || ||| ||||||||| | || ||| ||||| | || ||||| | || | Sbjct 1492 ATAAGAGCCTGTGGAACGAATATTGTTGATATGA-AGACCAACACCACCTGCAGTCTTGG 1550 Query 63372 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 63431 | || | || || ||| || || || || || || || || || ||| ||||| Sbjct 1551 AAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTCGTCCTTCATGG 1610 Query 63432 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63491 || || ||||| ||||||||| || | || || |||||||||| || || | Sbjct 1611 CAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAATAGTGTGGGGG 1670 Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63551 ||||||| || || || | || | | ||||| |||| | | || || |||| Sbjct 1671 AAGCGTGGGTGAAGTATCTCAACGACATCAAGTTGTAAGTCTTCAGCACGGACTCGATAT 1730 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 | | ||||| |||| || |||||||| | || || || || | ||| | | | Sbjct 1731 CGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTTGGGGACGTTCGGCCACTT 1790 Query 63612 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-- 63669 || || | | | || ||| || ||||| ||| ||||| ||||||||| |||| Sbjct 1791 CACCGTCTAGTCTTAGCAGGTA-GAACGTTCCAGAGTCTTAAACCCAAAATAGGTGTACT 1849 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAC 63729 ||||| |||| ||||| | || ||||||| || |||| || | || | || | Sbjct 1850 TGAAA--TCTCTGTCGTACACGATGGCCGAGTTCAGCGTATCTTTGTTTTCCATGACAAT 1907 Query 63730 ATCCATGGTAATACTT-----GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACA 63784 || || | |||| ||||| ||||| ||| ||||| | ||| ||||| Sbjct 1908 AT---TG--TAGACTTCATCCGAAATCATAGGGGCATGCTTCCCCGTGGCAGGGTTGACC 1962 Query 63785 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTT 63844 ||| | || ||||| || || | || | ||| | || | || |||| || Sbjct 1963 CAGTCGTGCAAGTCCTCAATGACCTTGGAGAACTGCTTTGTGGTCTGCTTATGTAAGTTG 2022 Query 63845 GATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGC 63903 || | ||| ||||||||||| | |||| ||||| || || || || || || || Sbjct 2023 GAGATGGCAATTCTAGCGGCCAACGTGGCGTAATCAGGGTGCACCGTGGT-CATGTATGC 2081 Query 63904 TGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACC 63948 | | ||||| ||||| |||||| ||| || || || ||||| Sbjct 2082 ACATGTCTCGGCAGCCAGGTTGTCCAGTTCGACGGTGGTGACACC 2126 >seq3120 Length=488 Score = 127 bits (140), Expect = 3e-24 Identities = 315/470 (67%), Gaps = 6/470 (1%) Strand=Plus/Plus Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCT 63307 || ||||| || | || | | ||| ||||| | || || || || || || || || Sbjct 1 GCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCA 60 Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 | || || || | |||||||| || ||| |||||| || || || || || Sbjct 61 GCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTT 120 Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427 || || || || || ||| || || || || ||||| || || || ||||||| || Sbjct 121 TTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTC 180 Query 63428 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63487 || || ||| |||||| |||||||| | || || || || ||||| || Sbjct 181 ATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTT 240 Query 63488 GGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547 ||||| ||||||||||| ||||| || | | || || || || | ||| | || Sbjct 241 GGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCA 300 Query 63548 ATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63606 || | || | ||||| |||| ||||| | ||| | | ||| || || | |||| | Sbjct 301 ATGTTATCACCG-TGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGC 359 Query 63607 GATCTTGTT-GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 | |||| ||| | | |||| ||||| || ||| |||||||||||||| || || Sbjct 360 AA-CTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAAC 418 Query 63666 TGTA-TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 |||| |||||| |||| || || | |||| | ||||| ||||||||||| Sbjct 419 TGTACTGAAAA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTT 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633600437206000