Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1567 109 5e-19 seq3934 89.7 5e-13 >seq1567 Length=2367 Score = 109 bits (120), Expect = 5e-19 Identities = 472/737 (64%), Gaps = 17/737 (2%) Strand=Plus/Minus Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 |||| || || || || || || || || || || |||||||| ||||||||||| Sbjct 1670 CCCCCACACTATTTAATGCCGGTACGCCACATCCTCAAATGTCTTCTTGTTTCCTGATTG 1611 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | | |||| ||||||||| || |||| ||||| | || || ||||| | || | Sbjct 1610 CCATGAAGGACGACTCCATTGAAGGTATTTACGACACTTTGAAAGAGTGTGCCATGATTT 1551 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || || || || | || | | || || | | ||| ||| || || || | Sbjct 1550 CCAAGACTGCAGGTGGTGTTGGTCTTCATATCAACAATATTCGTTCCACAGGCTCTTATA 1491 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | |||||||| || || || ||||| | | || ||| |||| |||||||||||| Sbjct 1490 TTGCAGGTACCAACGGTACTTCAAACGGGTTGATTCCCATGATCCGTGTCTTCAACAACA 1431 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || || ||||||||||| |||||| | ||| ||| | || || | | | | Sbjct 1430 CTGCACGTTACGTGGACCAAGGTGGTAACAAGAGACCCGGTGCCTTTGCCCTTTTCTTGG 1371 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||| ||||| || ||| | | || |||| | |||||| || || || || Sbjct 1370 AGCCATGGCATGCAGACATCTTCGACTTTGTCGATATCAGAAAGACTCATGGTAAGGA-- 1313 Query 94256 TGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 || | | || ||||| | ||| ||||| ||| | || || ||||| ||||| | Sbjct 1312 -AGAAATTCGTGCAAGAGATTTGTTCCCTGCTCTATGGATTCCCGATCTTTTCATGAAGC 1254 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTC-CCAATGAATGTCCC-GGACTGTC 94370 | ||||| | | ||||||| | || || || |||| || ||| || || Sbjct 1253 GTGTCGAAGAGGATGGGGCCTGGA--CCTTATTCTCACCAAGTGCTGCCCCAGGTTTGGA 1196 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 ||||||||| || || ||||| | ||| | ||||||||| || | | | | Sbjct 1195 CGACGTTTGGGGTGAAGAATTCGAAGAGCTATATACCCGTTACGAA----AGAGAAGGTC 1140 Query 94431 CAGG-AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 || || || | ||| ||| | ||| | ||| || | | ||| || | Sbjct 1139 GTGGTAAAACCATCAAGGCTCAAAAGGTATGGTACGCCATCTTGCAAGCACAAACAGAAA 1080 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | ||||| |||| ||| | | ||||| |||| ||| ||| ||||||| ||| || Sbjct 1079 CCGGTACACCCTTCATGGTTTATAAGGATGCCTGT-AACAGAAAGACCAACCAACAGAAC 1021 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || ||||| || || |||| ||| || ||||||||| |||| || || Sbjct 1020 CTGGGTACCATCAAATCGTCAAACTTGTGTTGCGAAATCGTCGAGTATTCTTCCCCAGAT 961 Query 94609 GAGATTGCTGTGTGTAA 94625 || | |||||| ||||| Sbjct 960 GAAACTGCTGTTTGTAA 944 >seq3934 Length=209 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 94114 ATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAG 94173 ||| |||| |||||||||||| | || || || || |||||||||||| | ||| Sbjct 209 ATGATCCGTGTCTTCAACAACACTGCCCGTTATGTTGACCAGGGTGGTAACAAGAGACCT 150 Query 94174 GGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTG 94233 ||| | || || | ||| | ||||| |||||||| || | | ||||||||| | Sbjct 149 GGTGCCTTTGCTCTATATTTGGAGCCATGGCACGCTGATATCTTCGACTTCATCGACATT 90 Query 94234 CGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGG 94290 ||||||| ||||| || || || | | || ||||| | ||| ||||| ||| Sbjct 89 AGAAAGAATCACGGTAAGGA---AGAAATCCGTGCGAGAGATTTATTCCCAGCTCTATGG 33 Query 94291 GTGCCAGACCTTTTTATGAAACGCGTCGA 94319 || || || ||||| ||||| || ||||| Sbjct 32 GTTCCCGATCTTTTCATGAAGCGTGTCGA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494698556600600