Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21]
3,985 sequences; 11,595,011 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1567 143 3e-29
seq246 82.4 9e-11
>seq1567
Length=2367
Score = 143 bits (158), Expect = 3e-29
Identities = 596/935 (64%), Gaps = 10/935 (1%)
Strand=Plus/Plus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || || || |||| |||||| ||||| |||| ||| || ||| | | |||
Sbjct 926 AGAGCAATGGAAGCTAAATTACAAACAGCAGTTTCATCTGGGGAAGAATACTCGACGATT 985
Query 47937 TC--AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGT 47994
|| | |||| || || | ||||||| ||||||| || || || || | |||
Sbjct 986 TCGCAACACA-AGTTTGACG-ATTTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGT 1043
Query 47995 TACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054
|||| || ||||| |||| ||| || ||||| || |||||| | || | || | ||| |
Sbjct 1044 TACAGGCATCCTTATAAACCATGAAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGG 1103
Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAG 48114
| ||| || | |||||| || | | || | | || |||||| |
Sbjct 1104 CGTACCATACCTTTTGAGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGG 1160
Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGAC 48174
|||||| || || ||||| || || | || | || || || || || | ||
Sbjct 1161 TATATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGCACTTGGTG 1220
Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234
| | || | ||| || |||| | || || | |||| || | ||| || ||||| |
Sbjct 1221 AGAATAAGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATA 1280
Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294
|||| || ||||| || | | | |||||| || ||| | || || | | || |
Sbjct 1281 GAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGA 1340
Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354
|||||| | || || ||||||||||| || || | | || | |||| |||| |
Sbjct 1341 CAAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCT 1400
Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414
| ||||| ||||| || | || | ||||| ||||| | || | | ||| || | |
Sbjct 1401 TGTTACCACCTTGGTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCA 1460
Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474
|| ||||| |||| ||||| || | ||||||| || | | | ||||| | |
Sbjct 1461 ACCCGTTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGA 1520
Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534
| || ||| | ||||||||| | || || || | |||||| ||| | || || |
Sbjct 1521 TATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGT 1580
Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594
|||| ||||| || || || |||| | || |||||| ||||||||| ||||
Sbjct 1581 AAATACCTTCAATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGAT 1640
Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654
| || || | |||||||| ||| || || || || | || || || || | ||
Sbjct 1641 GTGGCGTACCGGCATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCA 1700
Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714
| || || || | | || || || ||||| | || ||||||| | |||||||
Sbjct 1701 AGTTGTAAGTCTTCAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCA 1760
Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTT 48774
| | || || ||| || | ||| | | || | || | | | || || || ||
Sbjct 1761 TGACCAAATGTTGGGGACGTTCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTT 1819
Query 48775 CCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807
||| || ||||| ||||||||| |||| |||||
Sbjct 1820 CCAGAGTCTTAAACCCAAAATAGGTGTACTTGAAA 1854
>seq246
Length=9252
Score = 82.4 bits (90), Expect = 9e-11
Identities = 127/179 (71%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 48897 TAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATA 48956
|||||||| || ||||| | | ||| ||| | |||| |||||| | |||||| ||
Sbjct 9175 TAAAGATCCTCAACAACTTTAGAAAACTGTTTCGTGGTTTGTTTATGTAAATTAGAAATG 9116
Query 48957 GATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATAT 49015
| ||||||||||| || |||| |||||||| |||| || || ||||| | | || |
Sbjct 9115 GCGATTCTAGCAGCCAAAGTAGCGTAATCTGGGTGAACAGTGGT-CATGTAAGCACATGT 9057
Query 49016 TTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074
||| || || || |||||| || | || || |||||| ||| | ||| |||||
Sbjct 9056 TTCAGCGGCCAAATTATCTAGCTCGATCGTTGTGACACCTTCATAGACACCTGAAATAA 8998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562080799955400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |