Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1567 143 3e-29 seq246 82.4 9e-11 >seq1567 Length=2367 Score = 143 bits (158), Expect = 3e-29 Identities = 596/935 (64%), Gaps = 10/935 (1%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || || || |||| |||||| ||||| |||| ||| || ||| | | ||| Sbjct 926 AGAGCAATGGAAGCTAAATTACAAACAGCAGTTTCATCTGGGGAAGAATACTCGACGATT 985 Query 47937 TC--AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGT 47994 || | |||| || || | ||||||| ||||||| || || || || | ||| Sbjct 986 TCGCAACACA-AGTTTGACG-ATTTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGT 1043 Query 47995 TACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || ||||| |||| ||| || ||||| || |||||| | || | || | ||| | Sbjct 1044 TACAGGCATCCTTATAAACCATGAAGGGTGTACCGGTTTCTGTTTGTGCTTGCAAGATGG 1103 Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAG 48114 | ||| || | |||||| || | | || | | || |||||| | Sbjct 1104 CGTACCATACCTTTTGAGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGG 1160 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGAC 48174 |||||| || || ||||| || || | || | || || || || || | || Sbjct 1161 TATATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGCACTTGGTG 1220 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 | | || | ||| || |||| | || || | |||| || | ||| || ||||| | Sbjct 1221 AGAATAAGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATA 1280 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 |||| || ||||| || | | | |||||| || ||| | || || | | || | Sbjct 1281 GAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGA 1340 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||||| | || || ||||||||||| || || | | || | |||| |||| | Sbjct 1341 CAAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCT 1400 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | ||||| ||||| || | || | ||||| ||||| | || | | ||| || | | Sbjct 1401 TGTTACCACCTTGGTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCA 1460 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 || ||||| |||| ||||| || | ||||||| || | | | ||||| | | Sbjct 1461 ACCCGTTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGA 1520 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 | || ||| | ||||||||| | || || || | |||||| ||| | || || | Sbjct 1521 TATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGT 1580 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||| ||||| || || || |||| | || |||||| ||||||||| |||| Sbjct 1581 AAATACCTTCAATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGAT 1640 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 | || || | |||||||| ||| || || || || | || || || || | || Sbjct 1641 GTGGCGTACCGGCATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCA 1700 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 | || || || | | || || || ||||| | || ||||||| | ||||||| Sbjct 1701 AGTTGTAAGTCTTCAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCA 1760 Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTT 48774 | | || || ||| || | ||| | | || | || | | | || || || || Sbjct 1761 TGACCAAATGTTGGGGACGTTCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTT 1819 Query 48775 CCAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 ||| || ||||| ||||||||| |||| ||||| Sbjct 1820 CCAGAGTCTTAAACCCAAAATAGGTGTACTTGAAA 1854 >seq246 Length=9252 Score = 82.4 bits (90), Expect = 9e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 48897 TAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATA 48956 |||||||| || ||||| | | ||| ||| | |||| |||||| | |||||| || Sbjct 9175 TAAAGATCCTCAACAACTTTAGAAAACTGTTTCGTGGTTTGTTTATGTAAATTAGAAATG 9116 Query 48957 GATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATAT 49015 | ||||||||||| || |||| |||||||| |||| || || ||||| | | || | Sbjct 9115 GCGATTCTAGCAGCCAAAGTAGCGTAATCTGGGTGAACAGTGGT-CATGTAAGCACATGT 9057 Query 49016 TTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074 ||| || || || |||||| || | || || |||||| ||| | ||| ||||| Sbjct 9056 TTCAGCGGCCAAATTATCTAGCTCGATCGTTGTGACACCTTCATAGACACCTGAAATAA 8998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562080799955400