Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3120 147 6e-30 seq1567 118 3e-21 seq2589 113 1e-19 seq1165 113 1e-19 seq203 93.3 1e-13 seq4 91.5 4e-13 seq1156 87.8 5e-12 >seq3120 Length=488 Score = 147 bits (162), Expect = 6e-30 Identities = 291/431 (68%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 ||||| || |||||||||| | ||||||||| | || || ||||| || || || || Sbjct 1 GCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCA 60 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 ||| | || || | || |||| || ||||||||||| ||||||||||| | | Sbjct 61 GCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTT 120 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 || ||||| ||| |||||||| | ||| | | | ||||||||||| |||||||| | | Sbjct 121 TTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTC 180 Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 |||| | ||| | || || | |||||| |||||| ||||||||||||| || Sbjct 181 ATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTT 240 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCA 156383 || | || ||| |||| || || ||||| | | || || || | |||| Sbjct 241 GGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCA 300 Query 156384 AGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 | ||| |||||||||| | | ||| ||||| | || || ||||| || || Sbjct 301 ATGTTATCACCGTGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCA 360 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 | || | | || || | ||| | ||||| | ||||||||| ||||| ||| Sbjct 361 ACTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTG 420 Query 156504 AACAGAAAATC 156514 || ||||||| Sbjct 421 TACTGAAAATC 431 >seq1567 Length=2367 Score = 118 bits (130), Expect = 3e-21 Identities = 291/440 (66%), Gaps = 1/440 (0%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| || || || || || ||||| || |||||||||| | ||| ||||| | Sbjct 1403 TTACCACCTTGGTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAAC 1462 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || || ||||| || ||||| || ||||| || || | || |||| ||| | ||| Sbjct 1463 CCGTTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATA 1522 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || |||| |||||||| || ||||| || || || || | ||| | | || Sbjct 1523 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAA 1582 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||||||||| || || || | ||| | | || | || ||| | |||||| || Sbjct 1583 ATACCTTCAATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGT 1642 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 || || || || || |||||||| || | || || | || || | ||||| | Sbjct 1643 GGCGTACCGGCATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAG 1702 Query 156360 TCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 | ||| |||| | | ||| | || |||||||||| | | || | ||| Sbjct 1703 TTGTAAGTCTTCAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATG 1762 Query 156420 CACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCC 156479 || ||| || ||||| || | | | || || | || || ||||| | |||||| Sbjct 1763 ACCAAATGTTGGGGACGTTCGGCCACTTCACCGTCTAGTCTTAGCAGGTA-GAACGTTCC 1821 Query 156480 AGAGTTTTAAACCCGAAATA 156499 ||||| |||||||| ||||| Sbjct 1822 AGAGTCTTAAACCCAAAATA 1841 >seq2589 Length=927 Score = 113 bits (124), Expect = 1e-19 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645 ||| ||| |||| ||||| || |||||||| | || | || |||||| ||||| ||| Sbjct 335 CAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGAG-CGGAGTATTCAACAATTTCA 277 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||||||| |||||| |||||| || || ||||| ||||| ||||| ||||||||| Sbjct 276 CAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTTTGGTTGGATTTCCTGTTACAA 217 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 ||||||||||| | || | || || || || ||| | ||||| |||| Sbjct 216 GCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTTTGTGCTTCCA 168 >seq1165 Length=3371 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| | || ||| || ||| || ||||| | | |||| ||||||||| Sbjct 654 TTTCTTGTGGTGTTGTCGTAATGAACCATGATATCTTCTAGAGCTTTGACTAAACGACGT 713 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 714 TGAATATAACCTGTTTCAGCTGTCTTAACAGCAGTATCGATAAGACCTTCACGACCACCC 773 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 || ||||||||||| | ||||| Sbjct 774 ATTGCATGGAAGAAAAACTCTT 795 >seq203 Length=9829 Score = 93.3 bits (102), Expect = 1e-13 Identities = 301/461 (65%), Gaps = 10/461 (2%) Strand=Plus/Minus Query 233259 TTAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCA 233318 |||| |||| | |||||||| || |||||||||||||||||||||||||||| | | Sbjct 9645 TTAAGAATGAAGCGGCACCGTGTGCGATCATACAATCACGTTCCATTTCACCAAATCTTA 9586 Query 233319 GACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCT 233378 |||||| || |||| ||||| | || | ||| | |||||||| ||||||| Sbjct 9585 AACCACCGTCTCTTGATCTACCTTCCACCGGTTGTCTTGTTAAAACTTGCATTGGACCAC 9526 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGAC 233438 | || | || ||| || || | |||||||| | | | ||||| |||| Sbjct 9525 GGGCTCTGGCATGAATCTTGTCATCCACCATATGTCTTAAACGTTGGTAATATGTAGGAC 9466 Query 233439 CAATAAATAGTTCTGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTAC 233498 ||| || | || || ||||| || || | | ||| |||| | ||||||| | Sbjct 9465 CAAAGAAGATTTGAGCCATTAATTTTTTACCTGTGTGACCATTGTACATAACTTCAAACC 9406 Query 233499 C-CGATGAATTGTAACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGACCT 233557 | ||| || | ||||||| || ||||| | | ||||| | || | Sbjct 9405 CACGA-GATTGGTAACCATGTTCACGTAATA-ATTTAGATATACCCTCTACTGT-----A 9353 Query 233558 TTATTAGCAAACGCAGTACAATCACCAAAACCACCATACGTCGCACACGCTTTACCCATT 233617 | | | ||| | || | |||||| |||| | ||| | | |||| || | Sbjct 9352 ATGTCTGTAAATGGAGAAGCATCACCTTCGTTACCAGATAATGCAGCCACCTTACTCAAT 9293 Query 233618 AAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATT 233677 ||| ||| || || || | | |||||| | | ||| | ||| || |||||||||||| Sbjct 9292 AAACATTCGATTAAATGCGCCACAGTCATACGAGATGGAATAGCATGAGGATTGATAATT 9233 Query 233678 AAATCTGG-ACGTACTCCCTCCGATGTAAAAGGCATATCTT 233717 |||||||| ||| | || || | |||||| |||||||||| Sbjct 9232 AAATCTGGTACG-ATACCTTCTGCTGTAAATGGCATATCTT 9193 Score = 91.5 bits (100), Expect = 4e-13 Identities = 370/571 (65%), Gaps = 14/571 (2%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| | ||| || ||| ||||||| ||||| || || | |||| ||| || Sbjct 9692 ACAAATATGAACTCTGAAAGCATCGGATGCTTCCATTAATCTTTCCTTTAAGAATGAAGC 9633 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||||||| |||||||||||||| ||||||||||| || | | |||||| || | Sbjct 9632 GGCACCGTGTGCGATCATACAATCACGTTCCATTTCACCAAATCTTAAACCACCGTCTCT 9573 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | ||||| || | || || | || | | ||| ||||| || | | ||| Sbjct 9572 TGATCTACCTTCCACCGGTTGTCTTGTTAAAACTTGCATTGGACCACGGGCTCTGGCATG 9513 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCT 251663 ||| |||| |||||||| | | ||| ||||| ||| ||||| | |||||| | Sbjct 9512 AATCTTGTCATCCACCATATGTCTTAAACGTTGGTAATATGTAGGACCAAAGAAGAT--T 9455 Query 251664 CGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC 251720 || | |||| | | || || || | || ||||||||||| ||| ||||| Sbjct 9454 TGA-GCCATTAATTTTTTACCTGTGTGACCATTGTACATAACTTCAAACCCACGAGATTG 9396 Query 251721 ATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGT 251780 |||||| ||| ||| | || ||| | | | || ||| | || || ||| Sbjct 9395 GTAACCATGTTCACGTAATAATTTAGATATACCCTCTA-CTGTAATGT-CTGTAAATGGA 9338 Query 251781 GCCG--TCTCCGTAAAGACCCATTTGAATCAAC-ACTTTGCCTAAAAGTGTCTCTTTCAG 251837 | | || || | ||| | | | || | || || | || | || | | Sbjct 9337 GAAGCATCACCTTCGTTACC-AGATAATGCAGCCACCTTACTCAATAAACATTCGATTAA 9279 Query 251838 TTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAG 251897 || || | |||||||||| ||||||||||| |||||||| || | || ||| | Sbjct 9278 ATGCGCCACAGTCATACGAGATGGAATAGCATGAGGATTGATAATTAAATCTGGTACGAT 9219 Query 251898 TCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTT 251956 || || || || || ||||||| ||| || | ||| || | |||||||| ||||||| Sbjct 9218 ACCTTCTGCTGTAAATGGCATAT-CTTCTCTACGATATGTGATACCAATAGTACCCTTTT 9160 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || ||||||||| ||| || ||||| || Sbjct 9159 GACCATGACGAGAAGCGAATTTGTCACCGAT 9129 >seq4 Length=23134 Score = 91.5 bits (100), Expect = 4e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | |||||| | |||||| | |||||||||||| | | |||||||||||| | Sbjct 17322 GCACCATAAGCAATGACACAATCTCTTTCCATTTCACCTAATCTCAGACCACCATCTCTA 17263 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 |||||||| | | |||||| || || || | ||| ||||| |||| | | Sbjct 17262 GACCTACCTTCAGTAGGTTGACGCGTCAAGACCGCTCTAGGACCACGAGCTCTTGCGTGC 17203 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCT 233452 || |||||| ||||||||||||| | | ||||||| || |||| ||| | | | Sbjct 17202 ATCTTATCTAAGACCATATGCTTCAATTTTTGATAATAAATTGGCCCAAAAAAGATATAT 17143 Query 233453 GCGTGTAA 233460 || ||||| Sbjct 17142 GCTTGTAA 17135 >seq1156 Length=3379 Score = 87.8 bits (96), Expect = 5e-12 Identities = 246/377 (65%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| ||| || | || |||| || || || | Sbjct 989 CTATCAAATCTACCGGGTCTTAATAAGGCTTTATCAAGGATGTCGGGCCTATTAGTACCA 1048 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 ||||| ||||||| | || | | | |||| |||||||| || |||||||| Sbjct 1049 GCCAAGACAACAACATGATCAGCTGGAGTAAAACCATCCATTTCCACCAACATTTGATTC 1108 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| | ||| ||||||||||| | |||| ||| ||| | || ||| Sbjct 1109 AATGTGTTTTCTCTTTCATCATTAGCACCTGAAAAATTACC---TTTTTGTCTAGCTTTC 1165 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || | |||||||||||||||||| || | | | |||| |||| || ||| || Sbjct 1166 CCGATAGCATCAATTTCGTCAATAAACACAATCGAAGGAGCGTTTTCCCTTGCAGTTTTG 1225 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || |||||||| | | || || | ||| ||| ||||||| ||||| || ||| || Sbjct 1226 AACAAATCTCTTACCCTTGCAGCACCGACACCTACAAACATTTCAACAAACTCTGAACCG 1285 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || | ||||| || || || || || ||| |||| || | || ||| Sbjct 1286 GAAACAAAATAGAATGGGACGCCGGCCTCACCGGCGGTAGCCTTCGCAAGCAAGGTTTTA 1345 Query 289210 CCTGTTCCAGGTGGTCC 289226 || || || ||||| || Sbjct 1346 CCGGTACCTGGTGGACC 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471742452212945