Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq131 91.5 2e-13 seq1165 87.8 2e-12 seq203 82.4 1e-10 seq4 82.4 1e-10 >seq131 Length=11630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 168527 AGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGT 168586 |||| | |||||| || || ||| | || ||| | || | ||| ||| |||||| Sbjct 8775 AGAATTATTATGGTTTGTAGCCGGTGCTACAGATGCTAATCTCTTATCTGAGCAAGGTGT 8834 Query 168587 TAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAG 168646 ||| | ||| ||| |||||| |||||||||| || ||| ||| | || || || Sbjct 8835 AAAAATCTGGGACGGTAATGGGTCTCGTGAATACTTGGATAAGATTGGGCTCACGGATAG 8894 Query 168647 AAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATA 168706 ||||| ||| || | || || ||||||| || |||||||||||| || || ||||| Sbjct 8895 AAAAGTAGGAGACCTGGGCCCCGTTTATGGGTTCCAATGGAGACATTTCGGTGCCCAATA 8954 Query 168707 TATTGAC-TGTGATACAGATTACACCGGACAAGG 168739 | ||| || ||| || || ||||||||||| Sbjct 8955 CA-AGACGTGCGATGATGACTATACCGGACAAGG 8987 >seq1165 Length=3371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 51867 ATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAA 51926 |||||| |||| || ||||| || | ||||| | ||||||||| |||||| Sbjct 1918 ATGGATAATGATCCAGTTCTATTCAACCGTCAACCTTCGCTTCATAAAATGTCTATGATG 1859 Query 51927 AGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGGCTATGACTAAA 51986 | || ||| ||| || ||| ||||| | | |||||||| || | ||| Sbjct 1858 GCTCATAGAGTGAAAGTTATTCCATATTCTACATTCAGATTGAATTTGTCTGTCACTTCT 1799 Query 51987 GCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATC 52039 ||||||| || ||||||||||| |||||||||||| | |||||||||||||| Sbjct 1798 CCATATAACGCCGATTTTGATGGTGATGAAATGAATCTTCATGTTCCTCAATC 1746 >seq203 Length=9829 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 ||| |||| || || ||||| ||| | |||| | |||| || ||| |||||| | Sbjct 9123 CCTCAAATCGGTGACAAATTCGCTTCTCGTCATGGTC-AAAAGGGTACTATTGGTATCAC 9181 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 ||| ||||||||||||||||||||| |||||| ||||||||| | ||||| || Sbjct 9182 ATATCGTAGAGAAGATATGCCATTTACAGCAGAAGGTATCGTACCAGATTTAATTATCAA 9241 Query 193565 TCCAAATTGTATTCCATCCAGAATGAC 193591 ||| || ||||||||| | ||||| Sbjct 9242 TCCTCATGCTATTCCATCTCGTATGAC 9268 >seq4 Length=23134 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 |||||| | || || ||||||| ||| || |||| | |||| || ||||||||| || Sbjct 16813 CCTGAACTGGGAGACAAATTTTCATCAAGACATGGAC-AAAAGGGTGTTTGTGGTATTAT 16871 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 | ||||||||||||||| || | | | |||||| || |||||||||||||| || Sbjct 16872 TGTCAAACAAGAAGATATGCCTTTCAATGATCAAGGTATTGTGCCAGATATTATTATGAA 16931 Query 193565 TCCAAATTGTATTCCATCCAGAATGAC 193591 || | || | |||||| | ||||| Sbjct 16932 CCCTCACGGTTTCCCATCCCGTATGAC 16958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635145960215800