Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2589 167 3e-36 seq3120 82.4 1e-10 >seq2589 Length=927 Score = 167 bits (184), Expect = 3e-36 Identities = 472/713 (66%), Gaps = 24/713 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | || |||||| || || || || | ||| || || || | ||||| Sbjct 877 GTACATGTTGGAAGTAACTGGTTCGAAACACTCGTTGTAACCTAAAATCTGGGAAGTGGA 818 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATG-CG 110823 || || ||||| |||||||| ||||| ||| | || ||| | || | ||||| | Sbjct 817 TGCAGTAGGCATAGGTGCCATGGTCAAAGA--GTTTCTAACACCATGCTTCATGATGTCA 760 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAAC 110881 || || | | |||||| || | | | | | ||||| | | |||||||||| || Sbjct 759 TTTCTCAA-AGTATCCCAATCCCACAT-ACCGTAAGGTTTTTCGT-CCCACATGTCGAAT 703 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 ||||| | ||||| || || ||||| || | |||||||| || | || | || | Sbjct 702 TGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTATGGGCCATCTCTTTGA 643 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 || | ||||| || |||| ||| || || ||||||||||||||||| | ||| Sbjct 642 GCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCAAAGATTTGTATATTT 583 Query 111002 A-TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 | | | | ||||| || || || |||| | || |||| || || || || | Sbjct 582 AGTAAGCGT-GCTTCTTCGGAGTCGAATGGTAAACGCAACAACATGAAAGTGTCAGCCAA 524 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 |||||| ||||||||| |||| || ||||||| ||||||||| ||| || ||| || Sbjct 523 ACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATCTTCTTGCTTCCTCGAC 464 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| | || | |||||| || ||||| || || | || || | ||||| Sbjct 463 AGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGATAACTTTAGAAATTTC 404 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGT------CTCTTCA----TTGACATACTT-- 111228 ||| || |||| | | | | || ||| |||||| || ||| | Sbjct 403 ATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAGATGTTTCAATAAATGC 344 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| | || | || ||||| || |||||||| |||||||| | | | ||| || | Sbjct 343 TGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGAGCGGAGTATTCAAC 284 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 |||||| || ||||| || ||| || ||||| ||||||||||| ||| | Sbjct 283 AATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTTTGGTTGGATTTCCT 224 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 ||| || ||||||||||| | | |||| || || || ||||| |||| || Sbjct 223 GTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTTTGTGCTT 171 >seq3120 Length=488 Score = 82.4 bits (90), Expect = 1e-10 Identities = 169/249 (68%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 |||||||| ||||| || || || ||||| ||| | | ||| | |||||||| Sbjct 103 CCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCT 162 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || || || ||||| | || | ||||| || |||||| || || |||||||| Sbjct 163 TCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTA 222 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT-GGGACATCTTGTCGTA 112014 ||||| ||||| | ||||| | |||||| | || || || |||||||| || || Sbjct 223 CCAGCGTTGAATAAAGTTGGAGAGGCGTGAGT-AAAGTATTTTAGGGACATCAAGTTATA 281 Query 112015 TGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACAT 112074 || || | | | ||||||| || ||||| || || | ||||| | ||||| | Sbjct 282 GGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAATACCTAAGGCGACTCTCATGATTAA 341 Query 112075 GTACTGTGG 112083 || ||||| Sbjct 342 GTGTTGTGG 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628000716156000