Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1567 127 3e-24 seq2589 118 1e-21 seq18 114 2e-20 seq3120 105 8e-18 >seq1567 Length=2367 Score = 127 bits (140), Expect = 3e-24 Identities = 870/1384 (63%), Gaps = 38/1384 (3%) Strand=Plus/Plus Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAGA-TTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 ||| || || |||||||||| |||||||| |||||| ||| || || || ||||| || | Sbjct 406 TGGTTCGAAACACTCATTGT-ACCCAAGAATTTGGGATGTTGAAGCGGTTGGCATTGGGG 464 Query 118258 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 ||||| | ||| | | || | || | |||| | ||| | || |||||| | Sbjct 465 CCATGGTTAAAGAGTTTCTTAACCCATGTTTCACAATGTCCTTCTTCAAAGTGTCCCAAT 524 Query 118318 CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTG 118377 | | || || || | | |||||| || ||||| | ||||| | || || | Sbjct 525 CCCACATGCCAAATGGCTTAGCATTCCACATGTCGAACTGTAAAATACCCTTAGAGGCAG 584 Query 118378 GCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGA 118437 | || || ||||| || |||| || || | || || || | || || | Sbjct 585 GAGAGCCTTCAAAAGTGGAATATTTACCTTCCTTTTGAGCTAACTCACAAGAAGCTTCAA 644 Query 118438 GGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 118497 ||| || || || || ||||| ||||| | ||| | | | || | || | | Sbjct 645 GGGTAGCATGGTAAATAGTTTCGAAAATTTGTTTATTAAGTATTTGAGCTTTTTCACATT 704 Query 118498 CAAACGCGAGTCG--GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAAT 118555 |||| | | || ||| | |||| || || || | |||||| || || ||| |||| Sbjct 705 CAAATGGTAAACGCAGCATCATATAAGTA--TCGGCCAAACCTTGAACCCCCAGGGCAAT 762 Query 118556 TGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATAAAAATTCCTATCGA 118614 || | |||| |||| ||||| || | ||| ||| ||| |||||| | || | |||| Sbjct 763 AGGTCTATGTTTCATGTTAGAGTTTCTAGCC-TCTGGCACTGGATAATAGTTACGGTCGA 821 Query 118615 TAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAA 118674 | || ||||| | || | |||| || || | || ||||| | ||| | ||| Sbjct 822 TGACTCTATTCAAGTTATGAGTGATGACTTTAGCAATGTCATGTAAACTTTGGAAATTGT 881 Query 118675 AACTGCGAGTCT------CTTC---ATTGACATACTTA----GGAAGGGCGATTGACGCC 118721 | | || | |||| | | || || | || || || || || || Sbjct 882 AGGTCGCCGTTTTACCATCTTCCGAAGTCTCA-ACGAATGCTGGTAGAGCAATGGAAGCT 940 Query 118722 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTT 118781 | |||||| |||| || ||||| || ||||| | ||||| ||||||||| Sbjct 941 AAATTACAAACAGCAGTTTCATCTGGGGAAGAATACTCGACGATTTCGCAACACAAGTTT 1000 Query 118782 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAA 118841 || || ||||| |||| ||||| ||| || | |||| ||||||| |||||||| ||| Sbjct 1001 GACGATTTGATGGTACCCAGGTTCTGTTGGTTGGTCTTTCTGTTACAGGCATCCTTATAA 1060 Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG-AGAATAGCCTTCCAGACATCGGC 118900 | |||| | || || || || || ||||| | |||| | || || | ||| || | Sbjct 1061 ACCATGAAGGGTGTACCGGTTTCTGTTTGTG-CTTGCAAGATGGCGTACCATACCTTTTG 1119 Query 118901 AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 ||| | ||| || | || || ||| ||||| || || || |||| || Sbjct 1120 AGC---CTTGATGGTTTTACCACGACCTTCTCTTTCGTAACGGGTATATAGCTCTTCGAA 1176 Query 118961 CTCTTCACCC---ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 119017 ||||||||| ||| | || | ||||| || | ||| |||| | | ||| Sbjct 1177 TTCTTCACCCCAAACGTCGTC---CAAACCTGGGGCAGCACTTGGTGAGAATAAGGTCCA 1233 Query 119018 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 119077 ||| |||| || || ||||||||||| || || || ||||| || || | ||| | Sbjct 1234 GGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAA 1293 Query 119078 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 119137 ||| | ||| |||||| | || ||| | | | || | |||||| | ||| Sbjct 1294 ATCTCTTGCACGAATTTCTTCCTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGAT 1353 Query 119138 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCCCTTACGACG--ACCAGCCTG 119194 || || ||||| || |||| | | | || | | ||| | | |||| | || Sbjct 1354 GTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTG 1413 Query 119195 GTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTG 119254 || || || | |||||| ||| || ||||| | ||| ||||| | || | || Sbjct 1414 GTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGT 1473 Query 119255 GCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAAT 119314 || || || || |||| ||| ||| | | || || ||| || | ||||| Sbjct 1474 ACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAAC 1533 Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374 ||| ||||| ||| || || || ||||| | | | || |||| || || || || Sbjct 1534 ACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAAT 1593 Query 119375 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGC 119434 ||||| |||| | || || ||||| || ||||||||||| || ||||| || Sbjct 1594 GGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGC 1653 Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCT 119493 || || || || || | |||||| |||| || || |||||| || ||| |||| Sbjct 1654 ATTAAATAGTGTGGGGGAAGCGTGGGTGAA-GTATCTCAACGACATCAAGTTGTAAGTCT 1712 Query 119494 CCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATT 119553 || |||| || || ||||||||||| | | || ||||| | || | || Sbjct 1713 TCAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATGACCAAATGTT 1772 Query 119554 GGGG 119557 |||| Sbjct 1773 GGGG 1776 >seq2589 Length=927 Score = 118 bits (130), Expect = 1e-21 Identities = 353/542 (65%), Gaps = 16/542 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || || || || |||||||| || ||||| || || | || || || ||||| Sbjct 715 CCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTATGG 656 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 ||| || | || | || | || || | || || || ||||| |||||||| Sbjct 655 GCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCAAA 596 Query 118463 AATGCGAGCATTCATT--GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 118520 || | ||| | | || | || || ||||| || || | | || |||| || Sbjct 595 GATTTGTATATTTAGTAAGCGT--GCTTCTTCGGAGTCGAATGGTAAACGCAACAACATG 538 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || || || | |||||||||||| | |||| || | |||||||||||||| | Sbjct 537 AAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATCTT 478 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 | || ||| || |||||| | || | || ||||| | |||| || |||| | Sbjct 477 CTTGCTTCCTCGACAGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGATA 418 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA--- 118691 || || | |||||||| ||||||| | | | | | | ||| | ||||| Sbjct 417 ACTTTAGAAATTTCATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAGAT 358 Query 118692 -TTGACATACTTA--GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || ||| | || | || | || |||| ||||| |||| |||||||| | Sbjct 357 GTTTCAATAAATGCTGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGA 298 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | | ||| || | |||||| ||||||||| || ||| || |||||||||||| Sbjct 297 GCGGAGTATTCAACAATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTT 238 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || || || ||||||| ||||||||||||| | | || || || || |||||| Sbjct 237 TGGTTGGATTTCCTGTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTT 178 Query 118869 TG 118870 || Sbjct 177 TG 176 >seq18 Length=17773 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 167937 CCAGTAGGTGTCTACGGTCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATC 167996 ||||| ||| ||||||| | | ||||||||||| || || || ||||| | ||||| Sbjct 16930 CCAGTCGGTACCTACGGTAGAATCGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATT 16871 Query 167997 CAAGTTGGTGCGGGTGTTGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTC 168056 ||| ||||| |||||||| || |||||| || ||||||||||| || | | || Sbjct 16870 CAAACGGGTGCTGGTGTTGTCGACAGAGACTACACCGGTGAAGTCAAGGTTATCTTATTT 16811 Query 168057 AATCACGGGCACACAGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTA 168116 ||||| ||| | |||||| |||||||| || ||||| ||||| ||| | ||||| Sbjct 16810 AATCATTCGCAGAAGGATTTCGCGATCAAAAAAGGTGATCGTATCGCCCAATTGATCTTG 16751 Query 168117 GAGAGG 168122 || ||| Sbjct 16750 GAAAGG 16745 >seq3120 Length=488 Score = 105 bits (116), Expect = 8e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 119297 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 119356 ||| || || | ||||||||| || || || || || || || ||| | | | | Sbjct 90 GTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAAGT 149 Query 119357 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 119416 | ||||||| || || || || ||| |||| |||| | ||||| ||| |||||||| Sbjct 150 GTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACATTTG 209 Query 119417 AGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT-GGG 119475 |||| | ||||||||||||||||| | |||||| | |||| || || || || ||| Sbjct 210 AGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT-GAGTAAAGTATTTTAGGG 268 Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACC 119527 ||||| || ||||| || | |||| ||||| || ||||||||||| Sbjct 269 ACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAATACC 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618404394196600