Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2589 129 7e-25 seq3120 91.5 2e-13 >seq2589 Length=927 Score = 129 bits (142), Expect = 7e-25 Identities = 447/688 (65%), Gaps = 22/688 (3%) Strand=Plus/Plus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 ||||| || ||||||||||| | | ||||||| || || |||||| || || Sbjct 176 CAAACGGAAACTGGTACACCCTTTGTTGTTTACAAGGATGCTTGTAACAGGAAATCCAAC 235 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 |||||||| |||||||| |||||| || || | || ||||| | |||| | Sbjct 236 CAAAAGAACTTGGGTGTTATCAAGTCGTCTAACTTGTGCTGTGAAATTGTTGAATACTCC 295 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC--CAAGTATGTGG 105086 | ||||||||| ||||| |||||| | || || | ||| | || || ||| || Sbjct 296 GCTCCAGATGAGACTGCTGTTTGTAACTTGGCTTCTGTTGCTTTGCCAGCATTTAT-TGA 354 Query 105087 ATCC-----AGA-GACAAAG-----ACATTTGATTATGAAAAACTCCACGAAGTTACGAA 105135 | | ||| | |||| |||| | | | |||| || || ||| || | || Sbjct 355 AACATCTGAAGACGGCAAAACTTCTACATATAACTTCAAAAAGCTACATGAAATTTCTAA 414 Query 105136 AACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGC 105195 | | |||| ||| |||||| |||||||| | || | ||| || || ||| || Sbjct 415 AGTTATCACTCGTAACTTAAACAACGTTATTGACCGTAACTATTATCCTGTCGAGGAAGC 474 Query 105196 TCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGT 105255 | | |||||||||||||||| | || |||| | | ||||| || ||| | || || Sbjct 475 AAGAAGATCTAATATGAGACACAGGCCGATTGCTTTGGGTGTCCAAGGTTTGGCTGACAC 534 Query 105256 ATTCATTCTTTGTCGCC---ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCG 105312 ||||| |||| || || |||| || ||||| ||||| | | ||| | Sbjct 535 TTTCATG--TTGTTGCGTTTAC-CATTCGACTCCGAAGAAGCACGCTTACTAAATATACA 591 Query 105313 CATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGA 105372 || ||||| |||||||| || || | | || || || ||| | || | || Sbjct 592 AATCTTTGAAACCATGTACCATGCTTCCATGGAAGCCTCTTGTGAGCTAGCTCAAAGAGA 651 Query 105373 TGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATAT 105432 ||| ||||| |||||||| | || ||||||||||| ||||| | |||||||| || || Sbjct 652 TGGCCCATACGAAACCTTCCAAGGCTCTCCAGCTTCTCAAGGTATACTTCAATTCGACAT 711 Query 105433 GTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACG-CATCAAGG 105491 |||||| | | | | | | || ||||| || | || || | ||||| | Sbjct 712 GTGGGACGAAAAACCTTACGGTATGTGGGATTGGGATACT-TTGAGAAATGACATCATGA 770 Query 105492 AGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA 105551 || | ||| || | ||| | | |||||| || ||||| || || ||||| | || | Sbjct 771 AGCATGGTGTTAGAAACTCTTTGACCATGGCACCTATGCCTACTGCATCCACTTCCCAGA 830 Query 105552 TCTTGGGTAATAATGAATGCTTTGAACC 105579 | || ||| | || || || || ||||| Sbjct 831 TTTTAGGTTACAACGAGTGTTTCGAACC 858 >seq3120 Length=488 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| || | ||||| | || ||| | |||||||| || || ||||||| | | Sbjct 350 CCACAACACTTAATCATGAGAGTCGCCTTAGGTATTCACGGTGATAACATTGAGGCCGCT 291 Query 104282 TTGGAGACATACGACAAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | || || || || |||||||| || || || | |||||| | ||||| | || Sbjct 290 CTAGAAACCTATAACTTGATGTCCCTAAAATACTTT-ACTCACGCCTCTCCAACTTTATT 232 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| ||||||||||||| || ||||||||| || ||||| | || | ||||| || Sbjct 231 CAACGCTGGTACACCAAAGCCTCAAATGTCCTCCTGTTTCCTAGTTGCAATGAAGGATGA 172 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | |||||||| | ||| | | ||| ||||| || || || ||||| Sbjct 171 TTCCATTGAAGGTATCTACGACACTTTGAAGGAATGTGCTTTGATTTCCAAAACTGCTGG 112 Query 104461 GGGTATTGG 104469 |||||||| Sbjct 111 TGGTATTGG 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583231746321400