Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3120 129 6e-25 seq1567 123 3e-23 seq2084 118 1e-21 >seq3120 Length=488 Score = 129 bits (142), Expect = 6e-25 Identities = 235/339 (69%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||| | |||||||| ||||| |||||||| || | | || || || || || Sbjct 337 TCATGAGAGTCGCCTTAGGTATTCACGGTGATAACATTGAGGCCGCTCTA-GAAACCTAT 279 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 |||| ||| || ||| |||||||| |||||| | ||||| | |||||||||||||| Sbjct 278 AACTTGATGTCCCTAAAATACTTTACTCACGCCTCTCCAACTTTATTCAACGCTGGTACA 219 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | ||||| ||||| ||| ||||| || || ||||||||||| || || || || Sbjct 218 CCAAAGCCTCAAATGTCCTCCTGTTTCCTAGTTGCAATGAAGGATGATTCCATTGAAGGT 159 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || | ||||| ||||| || ||||| | |||||||| ||| | Sbjct 158 ATCTACGACACTTTGAAGGAATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTA 99 Query 53432 CACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | || ||| | ||||| | |||| | || || |||||||| | | Sbjct 98 CA-TATTCACAACATTCGTGCAACCGGCTCTTACATTGCTGGTACGAACGGGACTTCTAA 40 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529 || | | |||||| |||| |||||||||||||| || Sbjct 39 CGGGTTAATTCCTATGATCCGTGTCTTCAACAACACTGC 1 >seq1567 Length=2367 Score = 123 bits (136), Expect = 3e-23 Identities = 337/511 (66%), Gaps = 10/511 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTG----AGACG 53248 ||||||| || ||| | ||||| ||||| ||| || || ||||||| |||| Sbjct 1763 TCATGCGTGTGGCCCTAGGTATTCACGGCAGCGA-TAT---CGAGTCCGTGCTGAAGACT 1708 Query 53249 TACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 ||| |||| ||| | ||||| || ||||| | || || || || || || ||| Sbjct 1707 TACAACTTGATGTCGTTGAGATACTTCACCCACGCTTCCCCCACACTATTTAATGCCGGT 1648 Query 53309 ACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGAC 53368 ||| || ||||| ||||| || |||||| | || |||||||| ||||| || || Sbjct 1647 ACGCCACATCCTCAAATGTCTTCTTGTTTCCTGATTGCCATGAAGGACGACTCCATTGAA 1588 Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428 || || ||||| || | || ||||||||| || |||||| | |||||| | ||| Sbjct 1587 GGTATTTACGACACTTTGAAAGAGTGTGCCATGATTTCCAAGACTGCAGGTGGTGTTGGT 1528 Query 53429 ATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | || | || | ||| | | ||| | || || || ||||| | Sbjct 1527 CTTCATATCAACAATATTCGTTCCACAGGCTCTTATATTGCAGGTACCAACGGTACTTCA 1468 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || | | || ||| |||| |||||||||||||| || || ||||| |||| ||| Sbjct 1467 AACGGGTTGATTCCCATGATCCGTGTCTTCAACAACACTGCACGTTACGTGGACCAAGGT 1408 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 ||| ||| | || | || ||| | | | | ||||| ||||| || ||||| | Sbjct 1407 GGTAACAAGAGACCCGGTGCCTTTGCCCTTTTCTTGGAGCCATGGCATGCAGACATCTTC 1348 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT 53667 || ||| |||| | | || ||| ||| | ||||| || || ||| | || |||| Sbjct 1347 GACTTTGTCGATATCAGAAAGACTCATGGTAAGGAAGAAATTCG-TGCAAGAGATTTGTT 1289 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | ||||| |||||||| || || |||||| Sbjct 1288 CCCTGCTCTATGGATTCCCGATCTTTTCATG 1258 >seq2084 Length=1521 Score = 118 bits (130), Expect = 1e-21 Identities = 296/438 (68%), Gaps = 15/438 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| | ||||| ||||||| |||| ||| || || || | | || Sbjct 920 GGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAGAAGGTCAAACC 861 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| | || | ||||||||||| ||||||| |||||| || ||||||| Sbjct 860 GGGCATCATACCTCTTTTCTTCAACCAGAAGATGGAGGCGAAGGACCCGGAAAAGAAGAC 801 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----A 74925 ||||||| | || || ||||| || | || ||||| | ||||||| ||| | Sbjct 800 ACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACCGAACAGGGCATCGG-CGTCCTGGA 742 Query 74926 TCCAAGTCTGAGCCCATTCAG-CTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGG 74984 |||| | | |||||||| | ||| ||| || | |||| || ||||| || | | Sbjct 741 TCCATCTAAGGGCCCATTCGGCCTTCTCG-CAGATTTCTGGGATGGTGTCGATGGCGTTG 683 Query 74985 AAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 || | | || || ||| ||| ||| ||||||| | |||| |||| | ||||| | Sbjct 682 AACAAGAACTCGCTTTC-CTT-GGGGTCCTTGATGTAGGTGTCGATCAACAAGGAGTAGG 625 Query 75043 TCTCCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 | || || || || |||| ||| ||| |||| || |||||||| | ||||| | Sbjct 624 TTTCGGAGTGGATGTTCTCGATTG--CGATCTGGAACCCGTAGAAACTCTTGGCCTCCGG 567 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 ||||| || || | || || ||| | | | || || ||||||| ||||| ||||| Sbjct 566 GATCTGGACCTCGGTGGAGAAGTTCTCGACCAAGTTTTCGTTGACGATACCGTCGGAGGC 507 Query 75161 GGCGAAAAAAGCCAGTAC 75178 |||||| || || || || Sbjct 506 GGCGAAGAAGGCAAGCAC 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547188741803000