Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F000732305.1_202014-07-21] 3,985 sequences; 11,595,011 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1567 123 3e-23 seq3485 86.0 7e-12 >seq1567 Length=2367 Score = 123 bits (136), Expect = 3e-23 Identities = 288/432 (67%), Gaps = 17/432 (4%) Strand=Plus/Plus Query 81313 TCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC---- 81368 |||| |||||| | |||||| |||||||||||||||| | | ||| | | || Sbjct 1337 TCGACAAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGT 1396 Query 81369 --CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 |||| || |||| |||| |||||||| ||||| ||| || ||||| | ||| Sbjct 1397 CTCTTGTTAC---CACCTTGGTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATG 1453 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACC 81486 || || | || | ||| |||||| ||||| | ||| || || ||| || | Sbjct 1454 GGAATCAACCCGTTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATA 1513 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 ||| |||| |||||| | ||||||| ||| |||||| |||||| |||| Sbjct 1514 TTGTTGATATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAA 1573 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 || || ||||| || || ||| || | |||||| ||| || |||||| ||||| Sbjct 1574 GTGTCGTAAATACCTTCAATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATT 1633 Query 81607 TGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666 ||||| | | |||||||| || ||||| |||| ||||| |||| || | Sbjct 1634 TGAGGATGTGGCGTACCGGCATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAAC 1693 Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGA----ATATCGTCACCGTGAATACCGAT 81722 ||||||| || || || ||| | || ||| |||||| ||||||||||| | Sbjct 1694 GACATCAAGTTGTAAGT---CTTCA-GCACGGACTCGATATCGCTGCCGTGAATACCTAG 1749 Query 81723 AGCTACACGCAT 81734 || |||||||| Sbjct 1750 GGCCACACGCAT 1761 >seq3485 Length=333 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||||||||| ||||| ||||| || Sbjct 227 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCTTCA 286 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 || | ||||| ||| | ||| |||| ||||| |||||||| || || Sbjct 287 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTAT 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570281991413200