Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq26 122 1e-22 seq17 109 8e-19 >seq26 Length=194426 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| | || || || || || ||| |||| ||||| | ||| || ||| ||| Sbjct 159086 AAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATTGACAAT 159027 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | ||| || |||||||| ||||||||||| |||||||| |||||||| | || ||| Sbjct 159026 GTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATCTTT 158967 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || || || ||||| || || || |||| || || || || |||||||| ||||| Sbjct 158966 GCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAGGAATCC 158907 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || |||||||||| Sbjct 158906 ACTTTACATTTAGTCTTGAGATTGAGAGGTGGTAT 158872 >seq17 Length=83854 Score = 109 bits (120), Expect = 8e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||| || || ||||| ||| ||||| | ||| | | Sbjct 56177 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAGACTATCACTTTAGAGGTCGAATCTTCT 56118 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || |||||||| ||||| || ||| Sbjct 56117 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAA 56058 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||||||||| |||||| | || ||| || |||| | ||| ||||| Sbjct 56057 CAGAGATTGATTTTTGCAGGGAAACAACTGGAAGATGGTAGAACGCTGTCAGACTATAAC 55998 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAA 124772 |||||||| ||||| || | || ||||| | | || ||||||| |||||| Sbjct 55997 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTGAGACTAAGAGGTGGCAATTAAA 55943 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| || || ||||| ||| | ||| | ||| | | Sbjct 56633 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 56574 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || |||||||| ||||| || ||| Sbjct 56573 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAA 56514 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||||||||| ||||| || || ||| || |||| | ||||| || Sbjct 56513 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 56454 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || ||||| || | || |||||||||| Sbjct 56453 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTAAGACTAAGAGGTGGTAT 56404 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || ||||| | ||| ||||| | Sbjct 56405 ATGCAGATTTTTGTCAAAACTCTGACCGGTAAGACCATAACCTTGGAGGTTGAATATTCT 56346 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || |||||||| || || || ||| Sbjct 56345 GACACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 56286 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||| || || |||||| | || || || |||| || ||||| || Sbjct 56285 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 56226 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| || ||| | || ||||| || | || |||||||||| ||| || Sbjct 56225 ATTCAAAAAGAGTCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGGTATGCAAATTT 56168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455480624000