Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-37 seq14 132 5e-26 >seq4 Length=235297 Score = 170 bits (188), Expect = 2e-37 Identities = 520/791 (66%), Gaps = 21/791 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| || |||| |||| | || || | || |||||||| ||||||||| || || Sbjct 179102 TCAATGGTAAATTGAATAGCAGCAGAAGCGGCTTGTGTTCTCAAATAATACATACCGGTC 179043 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || |||| ||||| ||||||||||| || || || | || || | Sbjct 179042 TTTAGACCTTTCTTCCAACCGTAGAAATGCATACTTGTTAGCTTACCCATGGTTGGGGCA 178983 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTAT--AAACGCACCTCTGTCGGCTGCCA 36967 | ||| ||| || || |||||| || ||||| | | ||||||||||| Sbjct 178982 CGCAAGAATAAATTCAAAGAATGGGATTGATCGATGTAAACGG--CACGGTCGGCTGCCA 178925 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | | | ||| ||||| || || |||||||| || ||||| | | ||| | | | Sbjct 178924 TGTTAATGATAGTCTTTTGTGAAATTTCCCAAACAGTCTTATACAAATCTTTCAATTCTT 178865 Query 37028 CTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATT-CTTTATG 37083 ||||| | | ||| |||||| |||||||| ||| | | |||| ||| || Sbjct 178864 GTGGTACGTTTGGTAAACCTTGAATGGAACCATTTTGTGTGATTAGA-TATTGCTTCATA 178806 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 ||| || ||| ||| | | | || | || || || |||||| || || ||| Sbjct 178805 CCATCATCCCAAATACCCAAATCAACCAAATCACGCAGTAAGTATGGATTGACGACTTGA 178746 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || ||||||| || | | | || || ||| |||| |||||| | |||| Sbjct 178745 AATTCACCAGATAGAACACGACGAGAGTACATGTTGGAAGTAACTGGTTCGAAACACTCG 178686 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTAT 37261 || | || ||| || || || || |||||||||||||| ||||| || | ||| | Sbjct 178685 TTGTAACCTAAAATCTGGGAAGTGGATGCAGTAGGCATAGGTGCCATGGTCAAAGAGT-- 178628 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTT---AGTTCATTCCAATCCCATAAATCTG 37318 |||| | ||||| | | || || ||| | ||| || ||||||||| | | | | Sbjct 178627 TTCTAACACCATGCTTCATGATG-TCATTTCTCAAAGT--ATCCCAATCCCACATACC-G 178572 Query 37319 TTGGGTTCTTTAACC-ACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 | |||| || || |||| || |||| || ||||||| | |||||||| | | Sbjct 178571 TAAGGTTTTTCGTCCCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGG 178512 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 | || || || || || | ||| |||||| || ||| | ||| | | |||| Sbjct 178511 AAGGTTTCGTATGGGCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGG 178452 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAG 37497 || || ||||| || ||||||||||||| || |||||||||| ||||||| | Sbjct 178451 TACATGGTTTCAAAGATTTGTATATTTAGTAAGCGTGCTTCTTCGGAGTCGAATGGTAAA 178392 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | ||| || || || ||||||||||| || ||||| | | | || || || ||| || Sbjct 178391 CGCAACAACATGAAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTC 178332 Query 37558 TTATTAGATCT 37568 |||||||||| Sbjct 178331 ATATTAGATCT 178321 Score = 168 bits (186), Expect = 6e-37 Identities = 414/625 (66%), Gaps = 2/625 (0%) Strand=Plus/Minus Query 38010 TTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGT 38069 || ||| || || | ||| || | ||| || ||||||| || | ||||||||| | | Sbjct 177864 TTCTTCGACACGCTTCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGC 177805 Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129 | |||||| || || ||||||||| | | | || ||||| ||||||||||| Sbjct 177804 ACGGATTTCTTCCTTACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTG 177745 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 |||||| || | ||| | | | || || ||||| || | ||| ||||| | || ||| Sbjct 177744 CCATGGCTCCAAATATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATA 177685 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 | | ||||| || | | | | |||||| | || || ||||| | ||||| | Sbjct 177684 ACGGGCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGT 177625 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309 ||| | || |||| || | || || || || || | || || ||||| || Sbjct 177624 ACCAGCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGC 177565 Query 38310 ATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369 | ||| || || ||||| |||| || || || || | |||||||| || ||||| Sbjct 177564 AGTTTTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATC 177505 Query 38370 CTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAA 38429 ||| |||| | || ||||| |||||||||||| ||| || || ||||| ||||| Sbjct 177504 CTTCATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAA 177445 Query 38430 TGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC 38489 || ||||| || || | || ||||| |||| | ||||| ||||||| | | Sbjct 177444 AGTTGGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGC 177385 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || || | | | ||||||||||||| | || ||||| | | |||||||| | ||| Sbjct 177384 CTCAATGTTATCACCGTGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTC 177325 Query 38550 TATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | || | || | | | || ||||| |||||| ||||| | || || || Sbjct 177324 AGCAACTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTA 177265 Query 38610 ACTATA-TGAATAATCTCTATCGTA 38633 ||| || |||| ||||||| || || Sbjct 177264 ACTGTACTGAA-AATCTCTGTCATA 177241 >seq14 Length=143611 Score = 132 bits (146), Expect = 5e-26 Identities = 520/802 (65%), Gaps = 37/802 (5%) Strand=Plus/Plus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 || || | || |||||||| || ||||| ||||| ||||| ||| |||| ||||| Sbjct 6661 GAAGCAGCTTGTGTTCTCAAGTAGTACATACCAGTCTTTAGACCCTTCTTCCAACCGTAG 6720 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTA---GGATTATCTATATATATTGTCATTGAT 36930 ||||||||||| || | |||| | || | ||||| | | | ||| || || Sbjct 6721 AAATGCATACTTGTAA-TTTTACCCATTGATGGGGATTGTAGGAAAAGATT--CAAGGAG 6777 Query 36931 TGACTTTGATCTAT--AAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAG 36988 || |||||| || ||| | | | | | || ||||| | | ||| ||||||| Sbjct 6778 TGGGATTGATCAATGTAAATGGAACGAT--CAGCAGCCATGTTGATAATGGTCTTTTGAG 6835 Query 36989 ATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTT 37045 | || |||||||| |||||||||| | ||| | | | || | | | || | || Sbjct 6836 AGATTTCCCAAACAGTTTTATATAGATCTTTCAAGTCTTGAGGAACGTTTGGTAAGTCTT 6895 Query 37046 GAATAGAACCATTATG--TAACACAATTGTATTCTTT-ATGTCATTATTCCACATATTTC 37102 ||| |||||||| || ||| ||| ||| ||| || || || ||| ||| | Sbjct 6896 TAATGGAACCATTTTGAGTAATCAAAT---ATTGTTTCATACTATCATCCCAAATAC--C 6950 Query 37103 TACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATAC 37160 | | | | || | | || || |||||| || || || || || |||||||| || Sbjct 6951 CAGGTCGACCAAATCACGTAGTAAGTATGGATTGACGACTTGGAATTCACCAGATAAGAC 7010 Query 37161 TCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTG 37220 | | | || || || ||| |||||| | | ||||| | | | ||||| Sbjct 7011 ACGACGAGAGTACATGTTTGAAGTGACTGGTTCGAAACATTCATTGTACCCAAGAATTTG 7070 Query 37221 AGATGTAGATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGTA 37278 |||||||| || || |||||||| || || | ||| | |||| || |||||| | Sbjct 7071 GGATGTAGAAGCGGTTGGCATTGGGGCCATGGTTAAAGAGT--TTCTTAACCCATGTTTG 7128 Query 37279 TTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACA 37336 ||| ||| |||| | ||||||||| | | | ||| || | || ||||| Sbjct 7129 ACAATGTCCTTCTTTAAAGTGTCCCAATCCCACATACCAAATGGCTTAGCATT--CCACA 7186 Query 37337 TATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGT 37396 | || |||||| |||||| ||| || ||||| | | | | || ||| || | Sbjct 7187 TGTCGAATTGTAAAATACCCTTAGAGGCAGGAGAGCCTTCAAAAGTGGAATATTTACCTT 7246 Query 37397 AAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTT 37456 ||| ||||| ||| ||| || ||| || | ||||| || || ||||||||||||| Sbjct 7247 CCTTTTGAGCTAATTCACAAGAAGCTTCAAGGGTGGCATGGTAAATAGTTTCGAAAATTT 7306 Query 37457 GTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACAT 37516 | |||| | ||||| |||| ||| | || |||| | | || | ||| | || Sbjct 7307 GCTTATTAAGTATTTGAGCTTTTTCACATTCAAATGGTAAACGCAGCATCATATAGGTAT 7366 Query 37517 CAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA---TCTAGACG 37573 | |||||||| ||||| || | | || ||||| ||| || ||||||| ||||| | Sbjct 7367 CGGCCAAACCTTGAACCCCCAGGGCAATAGGTCTGTGTCTCATATTAGAGTTTCTAGCC- 7425 Query 37574 ATTCTATCACTGGATAATAATT 37595 ||| |||||||||||| || Sbjct 7426 --TCTGGCACTGGATAATAGTT 7445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 287/445 (64%), Gaps = 0/445 (0%) Strand=Plus/Plus Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTT 38065 |||| | ||| || || | ||| || | |||||| | ||||| |||| || |||||| Sbjct 7871 CATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGGGCAGGGAACAAATCTC 7930 Query 38066 TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125 | | | | |||||| || || | | ||||| | | ||| ||||| || || | Sbjct 7931 TTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAACAAAGTCGAAGATGTCTG 7990 Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185 | |||||||| || | ||| | | || || ||||| || | ||| || || | | Sbjct 7991 CATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCA 8050 Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245 || | | |||||||| ||| | | ||| || | | ||||| || | |||| Sbjct 8051 CGTAACGTGCAGTGTTATTGAATACACGGATCATGGGAATCAACCCATTTGAAGTACCGT 8110 Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCAC 38305 | |||| | ||||||| || | | || ||||| | || | || | |||| Sbjct 8111 TGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCAC 8170 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 ||||| || || || | || || | ||| || || || | |||||||| || || Sbjct 8171 CTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCGATGGAGT 8230 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | ||||| || | | | |||||| |||||||||||| ||| || ||||| |||| Sbjct 8231 CGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTGTGGCGTACCGGCATTAA 8290 Query 38426 ATAATGTAGGAGATGCATGTATGAA 38450 ||| || || || || || |||| Sbjct 8291 ATAGAGTGGGGGAAGCGTGAGTGAA 8315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524477889200