Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17 109 4e-19 seq20 104 2e-17 >seq17 Length=83854 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||||| ||||| || | || |||||||| | |||||||| |||| || | Sbjct 56416 AGTCTTAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTA 56475 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||| ||||| || ||||||||||||| |||||| || | || | |||||| Sbjct 56476 CCATCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCC 56535 Query 43012 TTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGT 43070 || || |||| |||| || || || | | ||||| || ||||| || | || Sbjct 56536 TTGTCCTGGATCTTACTC-TTCACATTGTCTATGGTGTCAGAAGATTCGACCTCCAAAGT 56594 Query 43071 TATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || ||||||||||| |||||||| ||||| Sbjct 56595 GATAGTCTTACCAGTTAGAGTTTTGACAAAAATCTGCAT 56633 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || || || |||| || | | || |||| |||||| || |||||| Sbjct 55987 TCCTTTTGAATGTTATAGTCTGACAGCGTTCTACCATCTTCCAGTTGTTTCCCTGCAAAA 56046 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCT 43037 ||||||| |||||| || | || | |||||| || || |||| |||| || || | Sbjct 56047 ATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGGATCTTACTC-TTCACATT 56105 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| || ||||| |||| || ||||| || || |||| |||||| || Sbjct 56106 GTCTATGGTGTCAGAAGATTCGACCTCTAAAGTGATAGTCTTACCAGTTAAAGTTTTGAC 56165 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 56166 AAAAATTTGCAT 56177 >seq20 Length=304555 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | |||| ||||||||| | ||||| || ||| Sbjct 8897 CCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 8838 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| |||||||| || || ||||| ||||||| ||||| || | || Sbjct 8837 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8778 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| ||||| || ||| ||||| || || || Sbjct 8777 ATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACT 8718 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 8717 TCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369344363190