Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq17 170 4e-37 seq26 147 5e-30 seq13 147 5e-30 seq28 138 3e-27 seq20 134 3e-26 >seq17 Length=83854 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||||||| || || || | || | |||||||| || ||||| |||||||| || Sbjct 55951 CCACCTCTTAGTCTCAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCTGAC 56010 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||||||| ||||| |||||||| || |||||||| | |||||||| || || || Sbjct 56011 AGCGTTCTACCATCTTCCAGTTGTTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGTGGA 56070 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || ||||| ||||| || ||||| |||| ||| || || ||| ||| Sbjct 56071 ATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCGACC 56130 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || |||||||||||||| | ||||| ||||| || ||||| Sbjct 56131 TCTAAAGTGATAGTCTTACCAGTTAAAGTTTTGACAAAAATTTGCAT 56177 Score = 168 bits (186), Expect = 2e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || | || | || ||||| || ||||| || || || Sbjct 56632 ATACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCC 56691 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| |||||||| ||||| ||||| | ||||||||| || ||| Sbjct 56692 GACAGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGA 56751 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || | || || || || | ||||| || ||| Sbjct 56752 GGAATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCG 56811 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||||| | ||||||||||||||||| ||||| || || || || ||||| ||| || Sbjct 56812 ACCTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCATAGTGTCTA 56869 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || | || | || || ||||| ||||| || || || Sbjct 56176 ATACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCC 56235 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||||||||| |||||||| ||||| ||||| | ||||||||| || ||| Sbjct 56236 GATAGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGA 56295 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| | || || || || | ||| || | ||| Sbjct 56296 GGAATACCTTCCTTGTCCTGGATCTTAGACTTGACGTTATCGATGGTGTCAGAATATTCA 56355 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || |||||||| || || ||||| ||||| |||||||| Sbjct 56356 ACCTCCAAGGTTATGGTCTTACCGGTCAGAGTTTTGACAAAAATCTGCAT 56405 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || || || | || | |||||||| || ||||| || || || Sbjct 56404 ATACCACCTCTTAGTCTTAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCC 56463 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||| ||||| | ||||| || |||||||| | |||||||| || || Sbjct 56464 GACAGCGTTCTACCATCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGT 56523 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || ||||| |||| ||| || || ||| Sbjct 56524 GGAATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCG 56583 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || |||||||||||||| || ||||| ||||| |||||||| Sbjct 56584 ACCTCCAAAGTGATAGTCTTACCAGTTAGAGTTTTGACAAAAATCTGCAT 56633 >seq26 Length=194426 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || ||||| || ||||| Sbjct 158872 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG 158931 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 158932 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 158991 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| | ||| ||||| || | ||| || || ||| Sbjct 158992 GGGATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCA 159051 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||||| || || ||||||||||| Sbjct 159052 ACTTCTAGAGTGATGGTCTTACCAGT 159077 >seq13 Length=154029 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || || || || |||||| Sbjct 46852 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 46793 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| |||| || ||||| |||||| Sbjct 46792 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGA 46733 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 46732 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 46673 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | ||||| ||||| Sbjct 46672 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 46632 >seq28 Length=374213 Score = 138 bits (152), Expect = 3e-27 Identities = 290/428 (68%), Gaps = 21/428 (5%) Strand=Plus/Plus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || |||||||| |||||||| | || ||||| |||| ||||| ||||| || || Sbjct 39503 GACGGTATCGTCAACGAAAACTTGGTCGAGAACTTCTCCACCGAGGTCCAGATCCCGGAG 39562 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 |||| |||| ||||| |||||||| || || || || || || || || | ||| Sbjct 39563 GCCAAGAGTTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAAACCTACTCC 39622 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | || || || || || || | || ||| |||| || | | || ||| | | Sbjct 39623 TTGTTGATCGACACCTACATCAAGGACCCCAAGGAAAGC----GAGT-TCTTGTTCAACG 39677 Query 269057 AGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA 269107 | || || | | | || ||||| | |||||||| || | |||||| Sbjct 39678 CCATCGACACCATCCCAGAAATCTGCGAGAAGG----CCGAATGGGCCCTTAGATGGATC 39733 Query 269108 AACGATAGCGCG--CCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATA 269164 | || || ||| | ||| ||||| | || || || ||| | | |||||| | Sbjct 39734 CAGGACGCCGATGCCCTGTTCGGTGAAAGACTGGTCGCGTTCGCCTCCATCGAAGGTGTC 39793 Query 269165 TTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA 269224 ||||| || ||||| || ||| | ||||| ||||||||||||||||| | ||||| || Sbjct 39794 TTCTTCTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAAAGAGGTATGATGCCCGGT 39853 Query 269225 TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || || ||||| |||||| |||| |||| ||||||||||| ||| |||||| || ||| Sbjct 39854 TTGACCTTCTCCAACGAACTGATCTGCAGAGACGAAGGTTTGCACACCGACTTTGCCTGT 39913 Query 269285 TTATTATT 269292 || || || Sbjct 39914 TTGTTGTT 39921 >seq20 Length=304555 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || || || || || || || |||||||| | |||||| |||||||| | ||| Sbjct 8873 TGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCCAATTGC 8814 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || |||||||| Sbjct 8813 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTA 8754 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| || || ||| || || || |||||||||||||| || Sbjct 8753 GACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTACCGGTT 8694 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 8693 AAAGTCTTGACGAAAATTTGCATCTTG 8667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397588623940