Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 4e-15 seq2 89.7 6e-13 >seq11 Length=805687 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417 ||| |||| ||||| || || |||||| | || |||||| || || |||||| | Sbjct 365360 CCTCAAATCGGTGACAAATTCGCTTCTCGTCATGGTCAAAAGGGTACTATTGGTATCACA 365301 Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAAC 19477 |||||| |||||||||||| ||||| ||| ||||| || || ||| | ||||| || Sbjct 365300 TATCGTAGAGAAGATATGCCATTTACAGCAGAAGGTATCGTACCAGATTTAATTATCAAT 365241 Query 19478 CCACATGCTTTTCCAAGTCGAATGAC 19503 || |||||| ||||| ||| ||||| Sbjct 365240 CCTCATGCTATTCCATCTCGTATGAC 365215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 290/452 (64%), Gaps = 27/452 (6%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 |||||| || | |||| | |||||| ||| | ||| ||||| || | |||||||| Sbjct 225060 TTGTTCCTTCAAGGCTTCAACATGATCCTTATACACATGCGCATCCCCCAAAGTATGAAT 225119 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 || ||||| |||| |||||| || ||| |||||| | || || | ||||| || Sbjct 225120 GAACTCACCCGGTTCCATATCGACGACTTTAGCAATCATTCTGGTCAACAGGGCATATGA 225179 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTG--ATAACAT---TGA 6984 || | |||||| || ||||||| |||||||| || | || |||||| ||| Sbjct 225180 GGCAATATTAAATGGCACACCTAGCCCCATATCACAGGAACGCTGGTATAACAAACATGA 225239 Query 6985 CAAGATAA-------------AATATTGTCTATAG---------CATAAAATTGACACAA 7022 | | | | | | ||| | | ||||||| || | || Sbjct 225240 AAGGCGAGGCTTACCGCTTCCACTTTCCTCTTTGGGGAAACTGACATAAAACTGTGAAAA 225299 Query 7023 TACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAA 7082 | ||| ||||| |||||| | || || | ||| | |||||||||||| |||| | Sbjct 225300 AATATGGCATGGTGGTAAAGCCATCTTGTCAAAATCTGCAGGATTCCAAGCACTCATGAT 225359 Query 7083 AATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTAT 7142 || | |||||| | || |||||||||||||| ||||| | | ||||| || Sbjct 225360 GATCCTTCTATCGTAAGGGTTTGTTTTTAATTTGTGTATAACCTGCTTCAGCTGATCGAT 225419 Query 7143 ACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTG 7202 || || || ||| | | || || | | || | || || |||||||||||||| Sbjct 225420 GCCTTGTCCGGTATAGTCATCATCGCACGTCTTGTATTGGGCACCGAAATGTCTCCATTG 225479 Query 7203 AAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||||||||| || || | || ||| ||| Sbjct 225480 GAACCCATAAACGGGGCCCAGGTCTCCTACTT 225511 >seq2 Length=549560 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/288 (67%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 || |||||||| | || ||||||| |||||||| || | ||||||||||| | Sbjct 135873 GTAGTTAATCAACTACTGGCTAAAATGGATGGTGTTGATCAACTGAATAATATTTTGGTC 135814 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 ||||||||||||| || ||||| || ||| |||| | ||||| || ||| |||| Sbjct 135813 ATAGGTATGACCAATCGTAAAGATTTGATCGATATTGCTCTTTTACGTCCAGGTAGATTC 135754 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||| | | | ||||| ||||| ||| || |||| | || || ||||| | || Sbjct 135753 GAAGTTCAGGTTGAAATTCATTTACCGGACGAAAAAGGTAGACTGCAGATTTTTGACATT 135694 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATAT-ATTATCTCCCGATGTAGATTTAAATAAAAT 165032 || | ||||||| | | |||| || | | |||||| | ||| | || | Sbjct 135693 CAAACGAAGAAAATGAGAGAAAATAATATGATGAGC-GACGATGTTAACTTAGCTGAACT 135635 Query 165033 AGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGT 165080 ||| || |||||| |||| | ||||||||| | || || ||||| Sbjct 135634 AGCAGCTTTAACTAACAATTTTTCCGGTGCTGAAATTGAAGGTTTAGT 135587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871590338000