Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 170 5e-37 seq14 159 9e-34 >seq4 Length=235297 Score = 170 bits (188), Expect = 5e-37 Identities = 1031/1639 (63%), Gaps = 41/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || |||||| | ||||| | | ||| ||||| || | || || || ||||| || Sbjct 177424 TTTACTCACGCCTCTCCAACTTTATTCAACGCTGGTACACCAAAGCCTCAAATGTCCTCC 177483 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||||||||| |||||||| || ||||||| ||||| | ||| | Sbjct 177484 TGTTTCCTAGTTGCAATGAAGGATGATTCCATTGAAGGTATCTACGACACTTTGAAGGAA 177543 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| | |||||||| | ||| || || |||||| || || ||||| |||||||| Sbjct 177544 TGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATTCACAACATTCGTGCA 177603 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | ||||||| || || | |||| || || ||| | |||| ||| | || Sbjct 177604 ACCGGCTCTTACATTGCTGGTACGAACGGGACT-TCTAACGGGTTAATTCCTATGATCCG 177662 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| ||||| | || || ||||||||||| ||| | || || || Sbjct 177663 TGTCTTCAACAACACTGCCCGTTATGTTGACCAGGGTGGTAACAAGAGACCTGGTGCCTT 177722 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 |||| | ||| | ||||| || || ||||| || || || | || | | || || Sbjct 177723 TGCTCTATATTTGGAGCCATGGCACGCTGATATCTTCGACTTCATCGACATTAGAAAGAA 177782 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||| || || || ||| | ||||| | ||| | ||| || || |||||| | || | Sbjct 177783 TCAC-GGTAAGGAAGAAATCCGTGCGAGAGATTTATTCCCAGCTCTATGGGTTCCCGATC 177841 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTT-TTGCCCACA-CGAATG 364022 ||| |||||||| || || | | | |||| | | || | || ||| || Sbjct 177842 TTTTCATGAAGCGTGTCGAAGAAAACGGCACTTGGACTTTATTCTCTCCTACATCG--GC 177899 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 |||||| | || | |||||||| | || || ||||| || ||| Sbjct 177900 TCCAGGCTTAAGTGACTGCTACGGTGACGAATTTGAAGCCCTATATACCCGTTACGAA-- 177957 Query 364083 GGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | ||| | | | ||||||| || || || || | |||| | || |||| Sbjct 177958 --AAAGAAGGCCGTGGTAAGACTATCAAGGCCCAAAAATTGTGGTACTCTATATTGGAAG 178015 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || || || ||||||| | | | ||||| ||| | || ||| | || |||| Sbjct 178016 CACAAACGGAAACTGGTACACCCTTTGTTGTTTACAAGGATGCTTGTAACAGGAAATCCA 178075 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || || | ||| || || | ||| | || || ||| |||||||| Sbjct 178076 ACCAAAAGAACTTGGGTGTTATCAAGTCGTCTAACTTGTGCTGTGAAATTGTTGAATACT 178135 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-- 364319 ||||||| || |||||||| || |||||| | || || | || | || || ||| | Sbjct 178136 CCGCTCCAGATGAGACTGCTGTTTGTAACTTGGCTTCTGTTGCTTTGCCAGCATTTATTG 178195 Query 364320 AA-------AAGATGG---------TACTTTTGACCACCAGCATCTTTATGACGTAACCT 364363 || |||| || ||| | | || | | | || |||| || | Sbjct 178196 AAACATCTGAAGACGGCAAAACTTCTACATATAACTTCAAAAAGCTACATGA---AATTT 178252 Query 364364 ATCATGCT---ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTG 364420 | | | | ||| | || | |||| ||||| ||| || |||||||| | | Sbjct 178253 CTAAAGTTATCACTCGTAACTTAAACAACGTTATTGACCGTAACTATTATCCTGTCGAGG 178312 Query 364421 AAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTG 364480 |||| | ||||||||| | || | ||||||| | | ||||| || || | |||| Sbjct 178313 AAGCAAGAAGATCTAATATGAGACACAGGCCGATTGCTTTGGGTGTCCAAGGTTTGGCTG 178372 Query 364481 ACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGG 364540 || ||| ||| || | | |||| || || || || || | ||||||| Sbjct 178373 ACACTTTCATGTTGTTGCGTTTACCATTCGACTCCGAAGAAGCACGCTTACTAAATATAC 178432 Query 364541 AGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCA 364600 | ||||||||||| ||||| ||| | ||| || || ||||| | || ||| Sbjct 178433 AAATCTTTGAAACCATGTACCATGCTTCCATGGAAGCCTCTTGTGAGCTAGCTCAAAGAG 178492 Query 364601 AGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATC 364660 | || ||| || | | || || || ||| || || | | | || || || Sbjct 178493 ATGGCCCATACGAAACCTTCCAAGGCTCTCCAGCTTCTCAAGGTATACTTCAATTCGACA 178552 Query 364661 TATGGAATGTCACGCCAT-CTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAG 364719 | ||| | | | || | | || | ||| | |||||||| | | || | | | Sbjct 178553 TGTGGGACGAAAAACCTTACGGTATG-TGGGATTGGGATACTTTGAGAAATGACATCATG 178611 Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 ||||||||| | | ||||| | | || || ||||| || || || ||| | ||| Sbjct 178612 AAGCATGGTGTTAGAAACTCTTTGACCATGGCACCTATGCCTACTGCATCCACTTCCCAG 178671 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || | || |||||||||| |||||||| |||| ||| | || || || || ||| Sbjct 178672 ATTTTAGGTTACAACGAGTGTTTCGAACCAGTTACTTCCAACATGTACTCTCGTCGTGTT 178731 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || || || ||||||| || || ||| ||| || | ||| | || || Sbjct 178732 CTATCTGGTGAATTTCAAGTCGTCAATCCATACTTACTGCGTGATTTGGTTGATTTGGGT 178791 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 | |||| ||| | |||||| | ||| | ||| | |||||||| | || | Sbjct 178792 ATTTGGGATGATGGTATGAAGCAATATCTAATCACACAAAATGGTTCCATTCAAGGTTTA 178851 Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCG 365018 ||| | ||| |||| |||| | | || || || || ||||||||||| || | Sbjct 178852 CCAAACGTACCACAAGAATTGAAAGATTTGTATAAGACTGTTTGGGAAATTTCACAAAAG 178911 Query 365019 AACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAA 365078 ||| ||||| | ||||| ||||| || | | || ||| ||| ||| || || || Sbjct 178912 -ACTATCATTAACATGGCAGCCGACCGTGCCGTTTACATCGATCAATCCCATTCTTTGAA 178970 Query 365079 CGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 ||||| || | |||||| | ||||| ||| |||||||||||||| ||||| Sbjct 178971 TTTATTCTTGCGTGCCCCAACCATGGGTAAGCTAACAAGTATGCATTTCTACGGTTGGAA 179030 Query 365139 ATCCGGTCTTAAGACAGGT 365157 ||||| ||||| ||| Sbjct 179031 GAAAGGTCTAAAGACCGGT 179049 >seq14 Length=143611 Score = 159 bits (176), Expect = 9e-34 Identities = 510/779 (65%), Gaps = 13/779 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | || || | | ||||| || || | | || || ||||||||| Sbjct 8315 TTCACTCACGCTTCCCCCACTCTATTTAATGCCGGTACGCCACACCCTCAAATGTCTTCT 8256 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||||||||||| |||||||| ||||| | ||||| | || | Sbjct 8255 TGTTTCCTGATTGCCATGAAGGACGACTCCATCGAAGGTATTTACGACACTTTGAAAGAG 8196 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGC 363725 ||||| | |||||||||| |||||| || ||||| | ||| ||||| |||| | | Sbjct 8195 TGTGCCATGATTTCCAAGACTGCAGGTGGTGTTGGTCTTCATATCAACAATATTCGTTCC 8136 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 |||| | ||| ||| || || || ||| || |||||| || |||||||| | | Sbjct 8135 ACAG-GCTCTTATATTGCAGGTACCAACGG-TACTTCAAATGGGTTGATTCCCATGATCC 8078 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| || | || ||||| | ||||| ||||| ||||| ||| | || || | Sbjct 8077 GTGTATTCAATAACACTGCACGTTACGTGGACCAAGGTGGTAACAAGAGACCCGGTGCCT 8018 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| | | | ||||| ||||| || || || || ||| |||| | | ||||| Sbjct 8017 TTGCCCTTTTCTTGGAGCCATGGCATGCAGACATCTTCGACTTTGTTGATAT-CAGAAAA 7959 Query 363905 ACAC-GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || | || || || ||| | |||||| | ||| ||||| ||| || ||| || |||| Sbjct 7958 ACTCATGGTAAGGAAGAAATTCGTGCAAGAGATTTGTTCCCTGCCCTATGGATTCCTGAT 7899 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG- 364022 | ||| |||||||| || || | | | | ||| | || |||| ||| | || Sbjct 7898 CTTTTCATGAAGCGTGTCGAAGAGGATGGGGCCTGGACCCTATTTTCACCA-AGTTCTGC 7840 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 |||||| | ||| || |||||||| || | | | |||||| || ||| Sbjct 7839 CCCAGGTTTGGACGACGTTTGGGGTGAAGAATTCGAAGAGCTATACACCCGTTACGAA-- 7782 Query 364083 GGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 || ||| | | | |||| || || || || || | |||| |||||| | | Sbjct 7781 --AGAGAAGGTCGTGGTAAAACCATCAAGGCCCAAAAAGTGTGGTACGCCATCTTACAAG 7724 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || || || || || | ||| | |||||||| | || ||| | ||| ||| Sbjct 7723 CACAAACAGAAACCGGTACGCCATTCATGGTTTACAAAGACGCTTGTAACAGAAAGACCA 7664 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 ||||||| || | ||||| || | | || || ||| ||| || | || || Sbjct 7663 ACCAGCAAAACTTGGGTACTATCAAATCGTCGAATCTGTGTTGCGAAATCGTCGAGTATT 7604 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 | | || || || || || || |||||| | || || || || || || || |||||| Sbjct 7603 CTTCCCCAGATGAAACAGCTGTTTGTAACTTAGCTTCCATTGCCCTACCAGCATTTGTA 7545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352681543010