Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq17 111 1e-19 seq26 109 5e-19 seq28 107 2e-18 seq13 100 2e-16 seq20 96.9 3e-15 >seq17 Length=83854 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| |||||||| || | || || | || ||||| | Sbjct 56177 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAGACTATCACTTTAGAGGTCGAATCTTCT 56118 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| ||||| ||||| || || || || ||| Sbjct 56117 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAA 56058 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 |||||| |||||| | || || ||||| ||||||| |||| ||||| | |||| Sbjct 56057 CAGAGATTGATTTTTGCAGGGAAACAACTGGAAGATGGTAGAACGCTGTCAG--ACTATA 56000 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||| |||||||| |||| || || | ||| | ||||| || Sbjct 55999 ACATTCAAAAGGAATCTACCCTTCACTTGGTCCTGAGACTAAGAGGTGG 55951 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||||| || | || || | || ||||| | Sbjct 56633 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 56574 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| ||||| ||||| || || || || ||| Sbjct 56573 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAA 56514 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| | || || || | ||||||| |||| | ||||| ||| Sbjct 56513 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 56454 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| |||||||| |||| || || ||||| | ||||| || Sbjct 56453 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTAAGACTAAGAGGTGG 56407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||| | ||||| || | ||||| | || ||||| | Sbjct 56861 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 56802 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| || || ||||| |||||||| ||||| || ||| Sbjct 56801 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 56742 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || || || ||||| ||||| | |||| | ||||| ||| Sbjct 56741 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTGTCGGATTACAAC 56682 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || |||| || || |||| | ||||| || Sbjct 56681 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 56635 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 56345 GACACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 56286 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 ||||| |||||| || || || ||||| ||||| | |||| || | || |||| || Sbjct 56285 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAA-CGCTATCGGATTACAA 56227 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| || || |||| || || |||| | ||||| || Sbjct 56226 CATTCAAAAAGAGTCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 56179 >seq26 Length=194426 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || || || || ||||| || | || || | ||||| || | |||||||| Sbjct 159092 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 159033 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | |||||| |||||| ||||||||||| || || || || ||||| ||| || Sbjct 159032 GACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTG 158973 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || |||||| | ||||| | |||| | | ||| || ||||||||||| Sbjct 158972 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAG 158913 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || | |||||||| || ||||||||||| || Sbjct 158912 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 158875 >seq28 Length=374213 Score = 107 bits (118), Expect = 2e-18 Identities = 349/532 (66%), Gaps = 34/532 (6%) Strand=Plus/Minus Query 104887 CAGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAG 104946 ||||||||||| |||||||| ||||| ||||| | || ||||||||| | | ||||| Sbjct 39912 CAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAGAAGGTCAAA 39853 Query 104947 CCAGGTAGAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGAG 105006 || || | ||| ||| |||| || || |||||| || || |||||| Sbjct 39852 CCGGGCATCATACCTCTTT-----TCTTCAA-CCAGAAGATGGAGGCGAAGGACCCGGAG 39799 Query 105007 AAAAAGACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGCGAATGTAGCAGTTTGA 105066 || ||||||||||||| | ||| |||||||||| | ||| |||| ||| | | Sbjct 39798 AAGAAGACACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACCGAACAGGGCA--TCGG 39741 Query 105067 CTT--TCAATCCATTTCTGAGCCCATGTTGCCTTCCGTTTGACGCTATC---AATGTGCT 105121 | | | |||||| | | |||||| |||||| | | | | || ||| | Sbjct 39740 CGTCCTGGATCCATCTAAGGGCCCATTCGGCCTTC---TCGCAGATTTCTGGGATGGTGT 39684 Query 105122 CGATGGCATTCAAAATCCTGTCGCATTCCTGAGGATCTTTAATGTA---TTCGA-CCACA 105177 ||||||| || || | |||| ||||| || || || ||||| |||| | ||| Sbjct 39683 CGATGGCGTTGAACAAGAACTCGCTTTCCTTGGGGTCCTTGATGTAGGTGTCGATCAACA 39624 Query 105178 AGAATGTTGTACATTTCCGTGTGAACGCACTCGATAGATGTCTGTTGCGCATAGAAAAAA 105237 || | ||| |||| | ||| | | |||||| | |||| | | |||||| Sbjct 39623 AGGA----GTAGGTTTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAACTC 39568 Query 105238 GACGCCTCC---ATTTCGGGCACGGCCGACTGCATGTGCTCGATGATATTAGTGTTCACG 105294 |||||| || | | | ||| || | || ||||| | || ||| ||| Sbjct 39567 TTGGCCTCCGGGATCTGGACCTCGGTGGA---GAAGTTCTCGACCAAGTTTTCGTTGACG 39511 Query 105295 ATGACGTCGGCAGCGGCAAAAAACGCGAGAACGTGCTTCAAA--AAGAATCGTTCTTTAT 105352 || |||||| ||||| || || || || || || | | ||||||| ||| || | Sbjct 39510 ATACCGTCGGAGGCGGCGAAGAAGGCAAGCAC--TCTGGAGATGAAGAATCTTTCGTTTT 39453 Query 105353 CGTTCAGTTTGTTGTTCCAATCGTCAAAGTCTTTGGACATGTCGATTTCTTC 105404 |||||| | |||||||||| |||| | ||| ||||||| ||||||||| || Sbjct 39452 CGTTCATTCTGTTGTTCCAGTCGTGGATGTCCTTGGACAAGTCGATTTCCTC 39401 >seq13 Length=154029 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| ||||| || ||||| || | || || | ||||| || | ||||| || Sbjct 46632 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 46691 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | ||||| ||||||| ||||| ||||| || ||||| || ||||| ||| | Sbjct 46692 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 46751 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || |||||| | ||||| | |||| | | || || ||||| ||||| Sbjct 46752 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAG 46811 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || | |||||||| || ||||||||||| || Sbjct 46812 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 46849 >seq20 Length=304555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || || || ||||| || || | |||||| | ||||| || | Sbjct 8667 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATC 8726 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||| || | ||||| |||||| ||||| ||||| || || || || Sbjct 8727 TTCAGACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGA 8786 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||| ||| |||| | | || |||||| | ||||| | ||||| | || || Sbjct 8787 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTA 8846 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| || || || | || || || || ||||||||||| || Sbjct 8847 CAACATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGG 8897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935711808525