Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20 181 2e-40 seq17 170 4e-37 seq13 152 9e-32 seq26 143 5e-29 seq28 95.1 2e-14 >seq20 Length=304555 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||||| |||||||| ||||||||||| || || || | || || || || Sbjct 8883 CAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTC 8824 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || ||||| || || || || | |||||||||||| |||||||| ||||||||||| Sbjct 8823 TTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTC 8764 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||||||||| | |||||| || |||||||||| ||||| ||||| | ||| || || Sbjct 8763 TTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATAGT 8704 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||||| || ||||| Sbjct 8703 CTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 8671 >seq17 Length=83854 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || |||||||||||||| ||||| ||||| || || || || || ||||| Sbjct 56197 ACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCCGATAGCGTTCTACCGTCTTCC 56256 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || ||||| || | || |||||||| || ||||| ||||||||||| || Sbjct 56257 AGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATACCTTCCTTGTCCTGG 56316 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||||| ||||||||||| | |||| || |||||||| ||||| || Sbjct 56317 ATCTTAGACTTGACGTTATCGATGGTGTCAGAATATTCAACCTCCAAGGTTATGGTCTTA 56376 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || ||||| || |||||||| Sbjct 56377 CCGGTCAGAGTTTTGACAAAAATCTGCAT 56405 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || || ||||| ||||| ||||| || || || || |||||||| Sbjct 56425 ACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTACCATCTTCC 56484 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||||| || || || || || | ||| |||||||| |||||||| ||||||||||| || Sbjct 56485 AACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTGTCCTGG 56544 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||| || || |||||||| | ||||| || ||||| ||||| || || Sbjct 56545 ATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCGACCTCCAAAGTGATAGTCTTA 56604 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || ||||| || |||||||| Sbjct 56605 CCAGTTAGAGTTTTGACAAAAATCTGCAT 56633 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || ||||| ||||| ||||| || || || || || ||||| Sbjct 56653 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTACCGTCTTCC 56712 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || ||||| || | || |||||||| || ||||||||||||||||| || Sbjct 56713 AGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 56772 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | ||||||| ||||| || || | ||||| || ||||| || || || || Sbjct 56773 ATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCGACCTCCAAAGTAATAGTCTTA 56832 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||||||||| || ||||| Sbjct 56833 CCAGTCAGTGTCTTGACGAAAATTTGCAT 56861 Score = 145 bits (160), Expect = 1e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 ||||||| || || | || | || |||||||| || || || || ||||| ||||||| Sbjct 55943 TTTAATTGCCACCTCTTAGTCTCAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTAT 56002 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || || || |||||||| | || ||||| || || || | ||| ||||||| Sbjct 56003 AGTCTGACAGCGTTCTACCATCTTCCAGTTGTTTCCCTGCAAAAATCAATCTCTGTTGGT 56062 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | |||||||| ||||||||||| || ||||| ||| || || |||||||| | | Sbjct 56063 CTGGTGGAATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAG 56122 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || ||||| || || || || | || ||||| || || ||||| Sbjct 56123 ATTCGACCTCTAAAGTGATAGTCTTACCAGTTAAAGTTTTGACAAAAATTTGCAT 56177 >seq13 Length=154029 Score = 152 bits (168), Expect = 9e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || || |||| ||||| || ||||||||||| || || || | || || || || Sbjct 46835 CAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTC 46776 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || ||||| || || || || | |||||||||||| || || || ||||||||||| Sbjct 46775 TTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGGATACCTTCCTTGTC 46716 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||||||||||| |||||| || || ||||| | ||||| |||||||| |||||||| Sbjct 46715 TTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGT 46656 Query 68429 TTTTCCCGTGAGGGTCTTGACGAA 68452 || || || | || ||||| || Sbjct 46655 CTTACCAGTCAAAGTTTTGACAAA 46632 >seq26 Length=194426 Score = 143 bits (158), Expect = 5e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || || |||| ||||| || ||||| ||||| || ||||| | || || || || Sbjct 158889 CAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTC 158948 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || ||||| || || || || | |||||||||||| ||||| || ||||| ||||| Sbjct 158949 TTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTTGTC 159008 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||||||||| | ||||| || |||||||| | ||||| ||||| | |||||||| Sbjct 159009 TTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAGAGTGATGGT 159068 Query 68429 TTTTCCCGTGAGGGTCTTGACGAA 68452 || || || | ||||| ||||| Sbjct 159069 CTTACCAGTCAAAGTCTTAACGAA 159092 >seq28 Length=374213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 282/431 (65%), Gaps = 8/431 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||| ||||| || || || | ||||||||||||| ||| || | Sbjct 40216 CATGACACCGGCCTTTTGGTAGTCGGAGACTCTCTTTTCGAAGAAGTTGGTCTTACCGGC 40157 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 | ||||||| |||||||| || |||||||| ||| | | | ||| || ||| Sbjct 40156 CAAGGAAATGTTTTCCATGAAATCGAAGGGGTTGTCGACCTTGTAGTACTTCTTGTTACC 40097 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || | | ||| || |||||||||| ||| ||| |||||| ||| | ||| Sbjct 40096 GAAGGCGACCAAGAGTCTGTCTGCGACGAACTCGACGTATTGGTTCATCAAGTCGGCGTT 40037 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGT-CCTT--TTCGTTGGCGAC 10171 ||| || | || | | || | |||||| | ||||| ||| |||| | |||| Sbjct 40036 CATACCTAGCAAGGCGACTGGCAAGGCGTC---TAGGAAGTATCTTTGTTCGATCTCGAC 39980 Query 10172 CGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || || |||||| ||| || | | | || | ||||||| | | | | | Sbjct 39979 GGCCTCGGTGACGATTTTCTCGACGATGGCTGGGTCCGGCTTGTTTTTCAAGTGGGCGAA 39920 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 || | |||| | ||| | || ||||| | || ||| | |||||||| || Sbjct 39919 CAACAAACAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAGAA 39860 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351 || ||||||||| | || | || || |||||| |||| | ||| |||||||| Sbjct 39859 GGTCAAACCGGGCATCATACCTCTTTTCTTCAACCAGAAGATGGAGGCGAAGGACCCGGA 39800 Query 10352 GAACAGAAGAC 10362 || ||||||| Sbjct 39799 GA--AGAAGAC 39791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621766384600