Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28 273 4e-68 >seq28 Length=374213 Score = 273 bits (302), Expect = 4e-68 Identities = 593/873 (68%), Gaps = 26/873 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCAT-GTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 ||| || |||| || |||||| | || ||||||| || || |||| |||||| || Sbjct 39341 ATCCAGTACCACGAGATCTGG-CAATCGTACAAGCGTGCCGAGGCCTCCTTCTGGACTGC 39399 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTC---ACTGTCTGAGAACGA 42400 |||||| || ||| || ||||||||| || |||| | | || || ||||| Sbjct 39400 CGAGGAAATCGACTTGTCCAAGGACATCCACGACTGGAACAACAGAATGAACGAAAACGA 39459 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 || || ||| || | | || ||||||||||||||||| ||||| || ||||| || Sbjct 39460 AAGATTCTTCATCTCCAGAGTGCTTGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGA 39519 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 ||| ||| | | ||| | ||||| ||| | ||||| | |||||||| Sbjct 39520 AAACTTGGTCGAGAACTTCTCCACCGAGGTCCAGATCCCGGAGGCCAAGAGTTTCTACGG 39579 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 |||||||| || || |||||| | ||||| || ||| || || || |||| || Sbjct 39580 GTTCCAGATCGCGATCGAGAACATCCACTCCGAAACCTACTCCTTGTTGATCGACACCTA 39639 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| ||| ||| || | | ||||||| ||||| || || || || || Sbjct 39640 CATCAAGGACCCCAAGGAAAGCGAGTTCTTGTTCAACGCCATCGACACCATCCCAGAAAT 39699 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 | ||||||| || ||||| || | |||||| || |||| || |||||| || Sbjct 39700 CTGCGAGAAGGCCGAATGGGCCCTTAGATGGATCCAGGACGCCGATGCCCTGTTCGGTGA 39759 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 || ||||| || || || || |||| || |||||||||| || ||||||||||||| Sbjct 39760 AAGACTGGTCGCGTTCGCCTCCATCGAAGGTGTCTTCTTCTCCGGGTCCTTCGCCTCCAT 39819 Query 42761 CTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||| | ||| | | |||| | ||||||||| | |||||||| |||||||| ||| Sbjct 39820 CTTCTGGTTGAAGAAAAGAGGTAT-GATGCCCGGTTTGACCTTCTCCAACGAACTGATCT 39878 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 |||| ||||| || |||| | ||||||||||| | ||||| | |||| | | Sbjct 39879 GCAGAGACGAAGGTTTGCACACCGACTTTGCCTGTTTGTTGTTCGC---CCACTTGAAAA 39935 Query 42880 ACAAGCCCTCGAAGGAGC--GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA--G 42935 ||||||| || ||| ||| | ||| |||| |||||||| |||||||| Sbjct 39936 ACAAGCC--GGACCCAGCCATCGTCGAGAAAATCGTCACCGAGGCCGTCGAGATCGAACA 39993 Query 42936 AAG-GAGTTCCTCACGCAGTCGC--TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| | ||||| || ||| |||| || || || | || |||||| |||| | Sbjct 39994 AAGATACTTCCT-----AGACGCCTTGCCAGTCGCCTTGCTAGGTATGAACGCCGACTTG 40048 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC 43052 ||| | | ||| || ||| |||||| ||| ||| || | | ||| || Sbjct 40049 ATGAACCAATACGTCGAGTTCGTCGCAGACAGACTCTTGGTCGCCTTCGGTAACAAGAAG 40108 Query 43053 CTCTACAA-CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 |||||| || | ||||||||| || ||||| ||||| || |||| || ||||| Sbjct 40109 TACTACAAGGTCGAC-AACCCCTTCGATTTCATGGAAAACATTTCCTTGGCCGGTAAGAC 40167 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||| ||||| ||| | ||| |||||||||| Sbjct 40168 CAACTTCTTCGAAAAGAGAGTCTCCGACTACCA 40200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338550766800