Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq17 125 7e-24 seq28 100 3e-16 >seq17 Length=83854 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||||||||| |||||||| | ||| | | || || Sbjct 56197 ACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCCGATAGCGTTCTACCGTCTTCC 56256 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || ||||| |||||| | ||||| | ||| || || ||||| || || ||||||||| | Sbjct 56257 AGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATACCTTCCTTGTCCTGG 56316 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | | || || || | ||| | || || Sbjct 56317 ATCTTAGACTTGACGTTATCGATGGTGTCAGAATATTCAACCTCCAAGGTTATGGTCTTA 56376 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||||||| |||||||||||||| Sbjct 56377 CCGGTCAGAGTTTTGACAAAAATCTGCAT 56405 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || | ||||| || | ||||| || |||||||| |||||||| | Sbjct 56407 CCACCTCTTAGTCTTAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGAC 56466 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | | ||| || | |||||| || || | ||||||| ||| || || || || Sbjct 56467 AGCGTTCTACCATCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGTGGA 56526 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||| | | || | |||||| | | ||||| Sbjct 56527 ATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCGACC 56586 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || |||||||| |||||||||||||| Sbjct 56587 TCCAAAGTGATAGTCTTACCAGTTAGAGTTTTGACAAAAATCTGCAT 56633 >seq28 Length=374213 Score = 100 bits (110), Expect = 3e-16 Identities = 291/441 (66%), Gaps = 13/441 (3%) Strand=Plus/Plus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 || |||| |||||| | |||| || ||||||||||| || ||| || | || || | Sbjct 39765 TGGTCGCGTTCGCCTCCATCGAAGGTGTCTTCTTCTCCGGGTCCTTCGCCTCCATCTTCT 39824 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 |||| | | ||| | |||||||| | || || |||||| || |||| |||| Sbjct 39825 GGTTGAAGAAAAGAGGTATGATGCCCGGTTTGACCTTCTCCAACGAACTGATCTGCAGAG 39884 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC-AACACTAGAGTCGATCAAAAG 47321 ||||||| |||||||| ||||||||||| | | | | |||| || | | ||| Sbjct 39885 ACGAAGGTTTGCACACCGACTTTGCCTGTTTGTTGTTCGCCCACTTGA----AAAACAAG 39940 Query 47322 TTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTG-AGATGGAGTT 47380 |||| ||| |||| | || | |||| ||||||| || | | | || | Sbjct 39941 CCGGACCCAGCCATCGTCGAGAAAATCGTCACCGAGGCCGTCGAGATCGAACAAAGA-TA 39999 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 ||| || || |||| | | || | || |||||||| || |||||| | || Sbjct 40000 CTTCCTAGACGCCTTGCCAGTCGCCTTGCTAGGTATGAACGCCGACTTGATGAACCAATA 40059 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACA- 47499 | |||| || ||||| ||| | || || | || || ||| ||||| ||| ||| Sbjct 40060 CGTCGAGTTCGTCGCAGACAGACT-CTTGGTCGCCTTCGGTA--ACAAGAAGTACTACAA 40116 Query 47500 --CCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 ||| || || ||||| || ||| | |||||||| | | || ||||||||||| || Sbjct 40117 GGTCGACAACCCCTTCGATTTCATGGAAAACATTTCCTTGGCCGGTAAGACCAACTTCTT 40176 Query 47558 CGAGAAGCGCGTCGGCGAATA 47578 ||| ||| | ||| ||| || Sbjct 40177 CGAAAAGAGAGTCTCCGACTA 40197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500473093200