Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 165 1e-35 seq2 120 4e-22 >seq4 Length=235297 Score = 165 bits (182), Expect = 1e-35 Identities = 771/1211 (64%), Gaps = 36/1211 (3%) Strand=Plus/Minus Query 116062 TCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATAT 116121 |||||||| || || || || |||||||| || ||||| || || | || || || ||| Sbjct 178559 TCCCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTAT 178500 Query 116122 GGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCA 116181 ||||| || | || | || | || || | || || || ||||| || ||| Sbjct 178499 GGGCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCA 178440 Query 116182 AAAATGCGAGCATTCATT--GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAA 116239 || || | ||| | | || | || || ||||| || || | | ||| |||| | Sbjct 178439 AAGATTTGTATATTTAGTAAGCGT--GCTTCTTCGGAGTCGAATGGTAAACGCAACAACA 178382 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || || || | |||||||||||| | |||| || | |||||||||||||| Sbjct 178381 TGAAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATC 178322 Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359 ||| || ||| || |||||| | || | || ||||| | |||| || |||| Sbjct 178321 TTCTTGCTTCCTCGACAGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGA 178262 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA- 116412 ||| || | |||||||| ||||||| | | | | | | ||| | ||||| Sbjct 178261 TAACTTTAGAAATTTCATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAG 178202 Query 116413 ---TTGACATACTTA--GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 || ||| | || | || | || |||| ||||| |||| |||||||| Sbjct 178201 ATGTTTCAATAAATGCTGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTG 178142 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 | | | ||| || | |||||| ||||| || || ||| || |||||||||| Sbjct 178141 GAGCGGAGTATTCAACAATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCT 178082 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 |||| || || || ||||||| ||||||||||| | | | | || || || || |||| Sbjct 178081 TTTGGTTGGATTTCCTGTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCG 178022 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 |||| | | | |||| | ||| | | ||| | ||| || | || | Sbjct 178021 TTTGTGCTTCCAATATAGAGTACCACAATTTTTGGGCCTTGATAGTC---TTACCACGGC 177965 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAG 116705 | || | ||||| || || ||||| ||||| || ||||| ||| | || | || Sbjct 177964 CTTCTTTTTCGTAACGGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTA-AG 177906 Query 116706 CCCTGGTGCCTTATCT-GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 || ||| ||| || | ||| |||| | || ||| || || || || ||||||| Sbjct 177905 CC-TGGAGCCG-ATGTAGGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCA 177848 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824 |||| || || || | ||| || || | ||| | ||| | || |||||| | | Sbjct 177847 TGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTAC 177788 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | ||||| | | || | ||||| | |||||| |||||||| || |||| || | Sbjct 177787 CGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATA 177728 Query 116885 CCGCGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGT 116938 || | | || |||| || ||| ||||| ||||| | || || || Sbjct 177727 GAGCAAAGGCACCAGGTCTCTTGTTACCACC---CTGGTCAACATAACGGGCAGTGTTGT 177671 Query 116939 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 116998 | || || || | ||| ||||| | || | ||| || || || || ||| || Sbjct 177670 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 177611 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | | || | | | ||| || || | ||||||||| || || || || || Sbjct 177610 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 177551 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 || || ||| | | | || ||||||| || || || || ||| |||| |||| | | Sbjct 177550 AAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTA 177491 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||| ||| |||||||| ||| ||||||||||||||||||| | ||||| | |||| Sbjct 177490 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 177431 Query 117179 GGATGAACATACCTT-GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCC 117237 || || || || |||||||| | ||||| || | | | ||||| || Sbjct 177430 -GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCA 177372 Query 117238 CCGTGAATACC 117248 ||||||||||| Sbjct 177371 CCGTGAATACC 177361 >seq2 Length=549560 Score = 120 bits (132), Expect = 4e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 163353 CCAGTAGGTGTGTACGGTCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAGAGCGGTATC 163412 ||||| ||| |||||| | | || |||||||| || || || ||||| | |||||| Sbjct 461626 CCAGTCGGTACCTACGGTAGAATCGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATT 461685 Query 163413 CAAGTTGGTGCGGGTGTTGTGGATCCAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTC 163472 ||| ||||| |||||||| || ||||||||| ||||||||||| || | | || Sbjct 461686 CAAACGGGTGCTGGTGTTGTCGACAGAGACTACACCGGTGAAGTCAAGGTTATCTTATTT 461745 Query 163473 AATCACGGACACATGGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTA 163532 ||||| ||| | ||||||| |||||||| || ||||| ||||| ||| | ||||| Sbjct 461746 AATCATTCACAGAAGGATTTCGCGATCAAAAAAGGTGATCGTATCGCCCAATTGATCTTG 461805 Query 163533 GAGAGG 163538 || ||| Sbjct 461806 GAAAGG 461811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506778213800