Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07]
55 sequences; 11,656,823 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 143 3e-29
seq14 134 2e-26
>seq4
Length=235297
Score = 143 bits (158), Expect = 3e-29
Identities = 577/896 (64%), Gaps = 37/896 (4%)
Strand=Plus/Minus
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270
|||| || | ||| || | ||| |||||| |||||||| || | | | |||||| |
Sbjct 177850 TCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCT 177791
Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330
| || |||| || ||| || | ||||| | |||||||| |||||||| || ||||
Sbjct 177790 TACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAAT 177731
Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390
||| || | |||| |||| || ||||| || || || | ||| | |||||| ||||
Sbjct 177730 ATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGT 177671
Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450
| | || | | ||| || | | || || || | || || || || | ||| |||
Sbjct 177670 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 177611
Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510
|| | || | || || ||| | ||| |||||||| || |||| || || |
Sbjct 177610 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 177551
Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570
|||||| || | || || || || ||||| || |||||| |||| | ||
Sbjct 177550 AAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTA 177491
Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630
| ||||| |||||||| || | || || | || ||||| |||||||| || |
Sbjct 177490 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 177431
Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT---ATCCC 48687
|| |||| |||| || | ||| ||||| ||||| | | | | || || ||| |
Sbjct 177430 GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCAC 177371
Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747
||| ||||||| | || | ||| | | | ||| || | |||| ||| ||
Sbjct 177370 CGTGA---ATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAACTTGAC 177314
Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAA 48806
|| | | |||| | || || ||| || ||||||||||| || || |||| ||||
Sbjct 177313 CGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTGTACTGAA 177254
Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TAT----ATACT- 48860
|| || | |||| | ||| | ||| |||| | | ||||| | || || ||| |
Sbjct 177253 AA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTTGTTTTCCATGACAATATTG 177195
Query 48861 ---ACATC--CATTA--CAT---------TTTTTGA-TATAA---TTGA-TTCCTTGTAA 48899
||||| || | ||| ||| | || | |||| | | |||
Sbjct 177194 TAAACATCGTCAGAAATCATAGGAGCGGCTTTACCAGTAGCAGGGTTGACGTATCTATAA 177135
Query 48900 AGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGAT 48959
||||| || ||||| | | ||| ||| | |||| |||||| | |||||| || |
Sbjct 177134 AGATCCTCAACAACTTTAGAAAACTGTTTCGTGGTTTGTTTATGTAAATTAGAAATGGCG 177075
Query 48960 ATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATATTTC 49018
||||||||||| || |||| |||||||| |||| || || ||||| | | || ||||
Sbjct 177074 ATTCTAGCAGCCAAAGTAGCGTAATCTGGGTGAACAGTGGT-CATGTAAGCACATGTTTC 177016
Query 49019 TGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074
|| || || |||||| || | || || |||||| ||| | ||| |||||
Sbjct 177015 AGCGGCCAAATTATCTAGCTCGATCGTTGTGACACCTTCATAGACACCTGAAATAA 176960
>seq14
Length=143611
Score = 134 bits (148), Expect = 2e-26
Identities = 592/934 (63%), Gaps = 7/934 (1%)
Strand=Plus/Plus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || || || |||| ||||| |||||| |||| ||| || ||| | | |||
Sbjct 7558 AGGGCAATGGAAGCTAAGTTACAAACAGCTGTTTCATCTGGGGAAGAATACTCGACGATT 7617
Query 47937 TCAGCACATAGATTACCAC-ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
|| ||| ||||| | || |||||||||||||||| ||||| || || | ||||
Sbjct 7618 TCGCAACACAGATT-CGACGATTTGATAGTACCCAAGTTTTGCTGGTTGGTCTTTCTGTT 7676
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
||| ||||| ||||||| ||| || || || || |||||| | || | || | ||| |
Sbjct 7677 ACAAGCGTCTTTGTAAACCATGAATGGCGTACCGGTTTCTGTTTGTGCTTGTAAGATGGC 7736
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||| || | ||||| || | | || | | || |||||| ||
Sbjct 7737 GTACCACACTTTTTGGGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGGT 7793
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
|||| || || ||||| || || | || | || || || || | | || |
Sbjct 7794 GTATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGAACTTGGTGA 7853
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
| | | ||| || |||| | || || | |||| || | ||| || ||||| ||
Sbjct 7854 AAATAGGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAG 7913
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295
|| || ||||| || | | | |||||| || ||| | | || | | ||||
Sbjct 7914 GGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAAC 7973
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
|||||| | || || ||||||||||| || || | | || | |||| |||| ||
Sbjct 7974 AAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTT 8033
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
||||| ||||| || | || | ||||| || || | || | | ||| || | |
Sbjct 8034 GTTACCACCTTGGTCCACGTAACGTGCAGTGTTATTGAATACACGGATCATGGGAATCAA 8093
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475
|||||||| |||| ||||| || | ||||||| || | | | ||||| | ||
Sbjct 8094 CCCATTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGAT 8153
Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535
|| ||| | ||||||||| | || || || | |||||| ||| | || || ||
Sbjct 8154 ATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTA 8213
Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595
||| ||||| || || || |||| | || |||||| ||||||||| || ||
Sbjct 8214 AATACCTTCGATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTG 8273
Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655
|| || | |||||||| || || || || ||| | || || || ||| | |||
Sbjct 8274 TGGCGTACCGGCATTAAATAGAGTGGGGGAAGCGTGAGTGAAGTATCTCAATGACATCAA 8333
Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715
|| || || | | || || || || || | || ||||| | | ||||||||
Sbjct 8334 GTTGTAAGTCTTCAGCACGGACTCGATGTCGCTACCGTGGATACCCAGGGCCACACGCAT 8393
Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775
| || || ||| || | ||| | | || | | || | | | | || || |||
Sbjct 8394 GACCAGATGTTGGGGACGTTCGGCCACTTCGCCGTCTAGTCTTAGCAAGTAGGAACGTTC 8453
Query 48776 CAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807
||| || || || || |||||| |||| |||||
Sbjct 8454 CAAAGTCTTGAACCCGAAATAGGTGTACTTGAAA 8487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108413550200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |