Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 143 3e-29 seq14 134 2e-26 >seq4 Length=235297 Score = 143 bits (158), Expect = 3e-29 Identities = 577/896 (64%), Gaps = 37/896 (4%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| || | ||| || | ||| |||||| |||||||| || | | | |||||| | Sbjct 177850 TCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCT 177791 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || |||| || ||| || | ||||| | |||||||| |||||||| || |||| Sbjct 177790 TACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAAT 177731 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 ||| || | |||| |||| || ||||| || || || | ||| | |||||| |||| Sbjct 177730 ATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGT 177671 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | ||| || | | || || || | || || || || | ||| ||| Sbjct 177670 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 177611 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 || | || | || || ||| | ||| |||||||| || |||| || || | Sbjct 177610 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 177551 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| || | || || || || ||||| || |||||| |||| | || Sbjct 177550 AAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTA 177491 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | ||||| |||||||| || | || || | || ||||| |||||||| || | Sbjct 177490 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 177431 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT---ATCCC 48687 || |||| |||| || | ||| ||||| ||||| | | | | || || ||| | Sbjct 177430 GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCAC 177371 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747 ||| ||||||| | || | ||| | | | ||| || | |||| ||| || Sbjct 177370 CGTGA---ATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAACTTGAC 177314 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAA 48806 || | | |||| | || || ||| || ||||||||||| || || |||| |||| Sbjct 177313 CGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTGTACTGAA 177254 Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TAT----ATACT- 48860 || || | |||| | ||| | ||| |||| | | ||||| | || || ||| | Sbjct 177253 AA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTTGTTTTCCATGACAATATTG 177195 Query 48861 ---ACATC--CATTA--CAT---------TTTTTGA-TATAA---TTGA-TTCCTTGTAA 48899 ||||| || | ||| ||| | || | |||| | | ||| Sbjct 177194 TAAACATCGTCAGAAATCATAGGAGCGGCTTTACCAGTAGCAGGGTTGACGTATCTATAA 177135 Query 48900 AGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGAT 48959 ||||| || ||||| | | ||| ||| | |||| |||||| | |||||| || | Sbjct 177134 AGATCCTCAACAACTTTAGAAAACTGTTTCGTGGTTTGTTTATGTAAATTAGAAATGGCG 177075 Query 48960 ATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATATTTC 49018 ||||||||||| || |||| |||||||| |||| || || ||||| | | || |||| Sbjct 177074 ATTCTAGCAGCCAAAGTAGCGTAATCTGGGTGAACAGTGGT-CATGTAAGCACATGTTTC 177016 Query 49019 TGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074 || || || |||||| || | || || |||||| ||| | ||| ||||| Sbjct 177015 AGCGGCCAAATTATCTAGCTCGATCGTTGTGACACCTTCATAGACACCTGAAATAA 176960 >seq14 Length=143611 Score = 134 bits (148), Expect = 2e-26 Identities = 592/934 (63%), Gaps = 7/934 (1%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || || || |||| ||||| |||||| |||| ||| || ||| | | ||| Sbjct 7558 AGGGCAATGGAAGCTAAGTTACAAACAGCTGTTTCATCTGGGGAAGAATACTCGACGATT 7617 Query 47937 TCAGCACATAGATTACCAC-ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 || ||| ||||| | || |||||||||||||||| ||||| || || | |||| Sbjct 7618 TCGCAACACAGATT-CGACGATTTGATAGTACCCAAGTTTTGCTGGTTGGTCTTTCTGTT 7676 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| ||||| ||||||| ||| || || || || |||||| | || | || | ||| | Sbjct 7677 ACAAGCGTCTTTGTAAACCATGAATGGCGTACCGGTTTCTGTTTGTGCTTGTAAGATGGC 7736 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| || | ||||| || | | || | | || |||||| || Sbjct 7737 GTACCACACTTTTTGGGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGGT 7793 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||| || || ||||| || || | || | || || || || | | || | Sbjct 7794 GTATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGAACTTGGTGA 7853 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 | | | ||| || |||| | || || | |||| || | ||| || ||||| || Sbjct 7854 AAATAGGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAG 7913 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || || ||||| || | | | |||||| || ||| | | || | | |||| Sbjct 7914 GGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAAC 7973 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 |||||| | || || ||||||||||| || || | | || | |||| |||| || Sbjct 7974 AAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTT 8033 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 ||||| ||||| || | || | ||||| || || | || | | ||| || | | Sbjct 8034 GTTACCACCTTGGTCCACGTAACGTGCAGTGTTATTGAATACACGGATCATGGGAATCAA 8093 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||||| |||| ||||| || | ||||||| || | | | ||||| | || Sbjct 8094 CCCATTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGAT 8153 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 || ||| | ||||||||| | || || || | |||||| ||| | || || || Sbjct 8154 ATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTA 8213 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 ||| ||||| || || || |||| | || |||||| ||||||||| || || Sbjct 8214 AATACCTTCGATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTG 8273 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 || || | |||||||| || || || || ||| | || || || ||| | ||| Sbjct 8274 TGGCGTACCGGCATTAAATAGAGTGGGGGAAGCGTGAGTGAAGTATCTCAATGACATCAA 8333 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 || || || | | || || || || || | || ||||| | | |||||||| Sbjct 8334 GTTGTAAGTCTTCAGCACGGACTCGATGTCGCTACCGTGGATACCCAGGGCCACACGCAT 8393 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | || || ||| || | ||| | | || | | || | | | | || || ||| Sbjct 8394 GACCAGATGTTGGGGACGTTCGGCCACTTCGCCGTCTAGTCTTAGCAAGTAGGAACGTTC 8453 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 ||| || || || || |||||| |||| ||||| Sbjct 8454 CAAAGTCTTGAACCCGAAATAGGTGTACTTGAAA 8487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108413550200