Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4 140 2e-28 seq14 120 2e-22 >seq4 Length=235297 Score = 140 bits (154), Expect = 2e-28 Identities = 316/473 (67%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||| |||||||| |||| | |||| || || || ||| || | ||| |||| | Sbjct 177890 GGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCGGGAACC 177831 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | || |||||||||||||| | |||||||| || |||||||||||| | | Sbjct 177830 CATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTACCGTGATTCTTTCTAATG 177771 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 || | ||| || || ||||| | ||||||||| || ||||| | |||||| ||| | Sbjct 177770 TCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGT 177711 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 || || ||||| || || || || | ||||| | ||||| || | ||| ||| Sbjct 177710 CTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCATAGGA 177651 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCG 26191 | ||| || | ||| ||||| || | | ||| | || || || | | ||| | | Sbjct 177650 ATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAATGTTG 177591 Query 26192 TGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAAACTG 26249 ||| ||| | ||| || |||||||| ||| ||||| ||||| || | ||| | Sbjct 177590 TGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAA--G 177533 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| | || |||| ||| |||| | |||||| | | || ||||| || || | || Sbjct 177532 TGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACATTT 177473 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | ||| || | || ||||| || || | || |||||| | ||| Sbjct 177472 GAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAGTAT 177420 >seq14 Length=143611 Score = 120 bits (132), Expect = 2e-22 Identities = 287/434 (66%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || ||| || | ||| |||||||| | ||| || |||||||| || | |||||||| Sbjct 7887 CTTCATGAAAAGATCAGGAATCCATAGGGCAGGGAACAAATCTCTTGCACGAATTTCTTC 7946 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || || ||| | ||| | | ||| | || || || || |||| |||||||| || || Sbjct 7947 CTTACCATGAGTTTTTCTGATATCAACAAAGTCGAAGATGTCTGCATGCCATGGCTCCAA 8006 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 | | ||||| ||| ||| || |||||||| || ||||| | |||||| | Sbjct 8007 GAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGTAACGTGCAGTGTT 8066 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 |||||| || | ||| |||| || ||| ||||| ||||| || | ||| | Sbjct 8067 ATTGAATACACGGATCATGGGAATCAACCCATTTGAAGTACCGTTGGTACCTGCAATATA 8126 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 || ||||| || | ||||| || ||||| ||| | ||||| || || ||||| Sbjct 8127 AGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCACCTGCAGTCTTGGAAAT 8186 Query 26230 AGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289 ||||| ||| | || ||| |||| |||| ||| || | ||||| | | Sbjct 8187 CATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCGATGGAGTCGTCCTTCATGGCAAT 8246 Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 | ||||||||||| | ||| | || | || || | |||||||| || || | ||| Sbjct 8247 CAGGAAACAAGAAGACATTTGAGGGTGTGGCGTACCGGCATTAAATAGAGTGGGGGAAGC 8306 Query 26350 ATGAGTATAATATC 26363 ||||| | |||| Sbjct 8307 GTGAGTGAAGTATC 8320 Score = 95.1 bits (104), Expect = 6e-15 Identities = 161/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 ||||||||||| |||||| ||||||||||| | || | ||||| || ||||| || || Sbjct 7026 GTTTGAAGTGACTGGTTCGAAACATTCATTGTACCCAAGAATTTGGGATGTAGAAGCGGT 7085 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| || || || || ||||| || |||| ||| ||||| || | ||||| Sbjct 7086 TGGCATTGGGGCCATGGTTAAAGAGTTTCTTAACCCATGTTTGACAATGTCCTTCTTTAA 7145 Query 25168 TTTATCCCAATCTAAATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAA 25227 | |||||||| | || | | || || | || || || || |||||||| Sbjct 7146 AGTGTCCCAATCCCACATACCAAATGGCT---TAGCATT-CCACAT--GTCGAATTGTAA 7199 Query 25228 CAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTT 25274 ||| | ||| | ||||| || |||||||| ||||||||||||| Sbjct 7200 -AATACCCTTAGAGGCAGGAGAGCCTTCAAAAGTGGAATATTTACCTT 7246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039830384125