Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq17 107 2e-18 seq20 104 2e-17 seq49 95.1 1e-14 seq13 82.4 6e-11 >seq17 Length=83854 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| |||| || || || || || | || || || Sbjct 56633 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 56574 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| ||||| | || || ||| Sbjct 56573 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAA 56514 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| ||||||||| |||| |||| ||||| || ||||||||||| Sbjct 56513 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 56454 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||| | ||| |||| ||||||| |||| || Sbjct 56453 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTAAGACTAAGAGGTGG 56407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | || || || || ||||| | || || || Sbjct 56861 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 56802 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | | || || || || ||||| |||||| | || ||| ||| Sbjct 56801 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 56742 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| || |||||||| ||||| || | ||||| || ||||||||||| Sbjct 56741 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTGTCGGATTACAAC 56682 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | ||| |||| |||| || |||| || Sbjct 56681 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 56635 >seq20 Length=304555 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||| ||||||||||| || || |||||| | ||| || || Sbjct 8668 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCT 8727 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || | | | | || || |||||| ||||| ||||| | || || Sbjct 8728 TCAGACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGAC 8787 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | ||| ||||| || |||| || | |||||| || | || ||| Sbjct 8788 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTAC 8847 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| || || || || ||| |||| || ||| || |||| || Sbjct 8848 AACATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGG 8897 >seq49 Length=358244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 206/299 (69%), Gaps = 12/299 (4%) Strand=Plus/Minus Query 34314 GAGCTCAGTCTCCGGGTTGTCACA--TTCCGGACACAACACAAACTTGCGGATGAAACCA 34371 || ||| || || || || | ||| |||| ||| | |||||| || |||||| || Sbjct 90015 GATCTCGGTTTCTGGATTCTTACAACTTCC--ACAAAGAACAAACCTGTTGATGAACCCG 89958 Query 34372 TCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431 || | || ||| || |||||| | | || || |||||||| | | || || || Sbjct 89957 TCCAACACGTCTTGCAACTTAGCAGGTTCATGAACACCGTTGACCAAATAACGATCTTTG 89898 Query 34432 TTGTAATCGACCTGC--GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG-GTAA 34488 | | || || | ||||| || ||||| ||| | ||||||||||| | || ||| Sbjct 89897 TCG--ATGGAAATAGAGGTTTGAGCACCCAGTTCGAAACCGAAGTACTT-GACGATGTAT 89841 Query 34489 ATGGCCGGAC-GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGAT 34547 ||| || | || ||| ||| | |||||| || | || ||| | ||| | || ||||| Sbjct 89840 GGGGCAGGTCTGTTCAA-CGCATGGGCGATGTCAGCCACGTTCAGGATTGCTGTTTTGAT 89782 Query 34548 GCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 ||||| || | ||||||||||| || ||| | ||||||||||| |||||||||| Sbjct 89781 ACCGTTACCTCTACCTTCGACCTTAGCCTGGATTGGAGGCATTTTGTAACGGTAGAACG 89723 >seq13 Length=154029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110282 TTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTC 110341 |||||||||||||| || || || ||||| || | ||| || || || ||| | Sbjct 46632 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 46691 Query 110342 GGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTT 110401 | | | || || |||||| ||||| ||||| | || || ||||||||| | Sbjct 46692 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 46751 Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 || | ||| ||||| || |||| || | ||||| || | || |||||||| ||||| Sbjct 46752 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAG 46811 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || | || || ||| || |||| || Sbjct 46812 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 46849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841323267115