Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 152 1e-31 seq54 123 6e-23 seq14 104 6e-17 seq33 91.5 3e-13 >seq4 Length=235297 Score = 152 bits (168), Expect = 1e-31 Identities = 560/864 (65%), Gaps = 16/864 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || ||||| |||||| | |||||| | || ||| | | ||||| || | | | Sbjct 177265 TACTTCGGTTTTAAAACTTTAGAACGTTCGTACTTATTGAGAGTCAACGGTCAAGTTGCT 177324 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| |||||| | | | | || || | |||||||| || || | ||| | Sbjct 177325 GAACGTCCACAACACTTAATCATGAGAGTCGCCTTAGGTATTCACGGTGATAACATTGAG 177384 Query 110424 GCTGTTATTGAATGTTATGATGT-AT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 || | | | ||| ||| | | || | ||||| | || ||| || |||| | Sbjct 177385 GCCGCTCTAGAAACCTATAACTTGATGTCCCTAAAAT--ACTTTACTCACGCCTCTCCAA 177442 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 | |||| ||||| || || | || ||| || | || || || || | | ||| Sbjct 177443 CTTTATTCAACGCTGGTAC-ACCAAAGCCTCAAATGTCCTCCTGTTTCCTAGTTGCAATG 177501 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || |||||||| ||||||||||| || || || | || ||| |||| | ||||| ||| Sbjct 177502 AAGGATGATTCCATTGAAGGTATCTACGACACTTTGAAGGAATGTGCTTTGATTTCCAAA 177561 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | |||| || |||||| | || |||| | ||||| ||| || | | || || Sbjct 177562 ACTGCTGGTGGTATTGGTCTACATATTCACAACATTCGTGCAACCGGCTCTTACATTGCT 177621 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 |||| || |||| | || | |||| ||| | | ||||||||| ||||||| Sbjct 177622 GGTACGAACGGGACTTCTAACGGGTTAATTCCTATGATCCGTGTCTTCAACAACACTGCC 177681 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 ||||| | || |||||| |||||| ||| | |||||| | ||| | || || Sbjct 177682 CGTTATGTTGACCAGGGTGGTAACAAGAGACCTGGTGCCTTTGCTCTATATTTGGAGCCA 177741 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 ||||| | ||||| || || ||| | || || | || ||||| || |||||| Sbjct 177742 TGGCACGCTGATATCTTCGACTTCATCGACATTAGAAAGAATCACGGTAAGGAAGAAATC 177801 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 | || | |||||||| || | ||| || | ||| | |||||||| ||||| || Sbjct 177802 CGTGCGAGAGATTTATTCCCAGCTCTATGGGTTCCCGATCTTTTCATGAAGCGTGTCGAA 177861 Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCT-CATCGTTCTCCTGGTCTATCTGATGTATA 110956 ||||| |||| ||| || | | | |||| ||||| |||| || || ||| || Sbjct 177862 GAAAACGGCACTTGGACTTTATTCTCTCCTACATCG-GCTCCAGGCTTAAGTGACTGCTA 177920 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA 111016 || | || ||||||| ||| || || |||||||||||| || | || | Sbjct 177921 CGGTGACGAATTTGAAGCCCTATATACCCGTTACGAAAAAGAAGGC-CGT---GGTAAGA 177976 Query 111017 AATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 || | || ||| || | |||| | || | ||| ||||| |||||||| || | Sbjct 177977 CTATCAAGGCCCAAAAATTGTGGTACTCTATATTGGAAGCACAAACGGAAACTGGTACAC 178036 Query 111076 CTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAA 111135 | | | || | || || ||| | ||| | ||||| || |||| ||| || || | Sbjct 178037 CCTTTGTTGTTTACAAGGATGCTTGTAACAGGAAATCCAACCAAAAGAACTTGGGTGTTA 178096 Query 111136 TTAAGTCTAGTAATTTGTGCTGTG 111159 | ||||| ||| |||||||||| Sbjct 178097 TCAAGTCGTCTAACTTGTGCTGTG 178120 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/205 (72%), Gaps = 14/205 (7%) Strand=Plus/Plus Query 113242 TGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTG 113301 |||||||| | | ||||||| ||||||||||| ||| | ||| | ||||| | Sbjct 178871 TGAAAGATTTGTATAAGACTGTTTGGGAAATTTCACAAAAGACTATCATTAACATGGCAG 178930 Query 113302 CAGATCGTGGCAAGTTTA--TCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACAC 113359 | || |||| | ||||| |||||||||| || || |||| ||||| ||| | | | Sbjct 178931 CCGACCGTGCC--GTTTACATCGATCAATCCCATTCTTTGAATTTATTCTTGCGTGCCCC 178988 Query 113360 CTCACCA--GATAAGGTGACA--TCTGCTCTATTT-TACGGCTGGAAAAAAGGTTTAAAA 113414 |||| | |||| | ||| | ||| |||| ||||| ||||| |||||| |||| Sbjct 178989 A--ACCATGGGTAAGCTAACAAGTATGC---ATTTCTACGGTTGGAAGAAAGGTCTAAAG 179043 Query 113415 ACAGGTATGTATTATTTGCGAACAC 113439 || ||||||||||||||| |||||| Sbjct 179044 ACCGGTATGTATTATTTGAGAACAC 179068 >seq54 Length=94118 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| ||||| ||||| | ||||| || || ||||||||||||||||||||| Sbjct 83247 GATAATGATCCAGTTCTATTCAACCGTCAACCTTCGCTTCATAAAATGTCTATGATGGCT 83188 Query 305378 CATAAAGTCAAAGTATTATCTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 |||| ||| ||||| | || ||| ||||| |||| ||| | || | | || Sbjct 83187 CATAGAGTGAAAGT-TATTCCATATTCTACATTCAGATTGAATTTGTCTGTCACTTCTCC 83129 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTAC 305496 ||||| || ||||||||||| |||||||||||| | ||||| |||||||| ||| || Sbjct 83128 ATATAACGCCGATTTTGATGGTGATGAAATGAATCTTCATGTTCCTCAATCTGAGGAGAC 83069 Query 305497 AATGACTGAATTATCAGAAATATGTTCTGT 305526 || | ||| |||| | ||||| |||| Sbjct 83068 AAGAGCGGAACTATCCCAGTTATGTGCTGT 83039 >seq14 Length=143611 Score = 104 bits (114), Expect = 6e-17 Identities = 262/398 (66%), Gaps = 3/398 (1%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || ||||||| || || | | || || || || || || ||||||||||| || Sbjct 8267 CAAATGTCTTCTTGTTTCCTGATTGCCATGAAGGACGACTCCATCGAAGGTATTTACGAC 8208 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 || | ||||| ||| | ||||| || | | || || ||||| |||| | | Sbjct 8207 ACTTTGAAAGAGTGTGCCATGATTTCCAAGACTGCAGGTGGTGTTGGTCTTCATATCAAC 8148 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 ||||||| || | ||| | |||| ||| | || ||| |||||| ||| | || Sbjct 8147 AATATTCGTTCCACAGGCTCTTATATTGCAGGTACCAACGGTACTTCAAATGGGTTGATT 8088 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGA 110747 || ||| | | || ||||| |||||||| || ||| | ||||||||| |||||| Sbjct 8087 CCCATGATCCGTGTATTCAATAACACTGCACGTTACGTGGACCAAGGTGGTAACAAGAGA 8028 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 || | ||||| | | | || || |||||| |||| || || || || | || Sbjct 8027 CCCGGTGCCTTTGCCCTTTTCTTGGAGCCATGGCATGCAGACATCTTCGACTTTGTTGAT 7968 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 | | |||| ||| || |||||| | ||| | ||||| || ||| | ||| Sbjct 7967 ATCAGAAAAACTCATGGTAAGGAAGAAATTCGTGCAAGAGATTTGTTCCCTGCCCTATGG 7908 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 ||| | ||| | |||||||| ||||| |||| |||| Sbjct 7907 ATTCCTGATCTTTTCATGAAGCGTGTCGAAGAGGATGG 7870 >seq33 Length=673385 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 167616 GCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCA 167675 ||||| | || || ||||| || |||||||| ||||||||||| | || || | Sbjct 657924 GCAGCTAGAGGCAGAGTGTTGAAGGTGTCGATGAACGTTTTCCAGATTCTGATATTACAA 657865 Query 167676 CGTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTT 167735 |||||||| |||||||| ||||| ||||| |||||| | || ||||||||||| || Sbjct 657864 CGTCGTTTACATTCATCATAAAATCCATAAACTCTTGTTACATTGGCACATTCGTGGTTA 657805 Query 167736 CCTCTTAA 167743 ||||| || Sbjct 657804 CCTCTCAA 657797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811963667855