Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 230 3e-55 >seq4 Length=235297 Score = 230 bits (254), Expect = 3e-55 Identities = 908/1405 (65%), Gaps = 44/1405 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | || |||||| || || || || | ||| || || || | ||||| Sbjct 178719 GTACATGTTGGAAGTAACTGGTTCGAAACACTCGTTGTAACCTAAAATCTGGGAAGTGGA 178660 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATG-CG 110823 || || ||||| |||||||| ||||| ||| | || ||| | || | ||||| | Sbjct 178659 TGCAGTAGGCATAGGTGCCATGGTCAAAGA--GTTTCTAACACCATGCTTCATGATGTCA 178602 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAAC 110881 || || | | |||||| || | | | | | ||||| | | |||||||||| || Sbjct 178601 TTTCTCAA-AGTATCCCAATCCCACAT-ACCGTAAGGTTTTTCGT-CCCACATGTCGAAT 178545 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 ||||| | ||||| || || ||||| || | |||||||| || | || | || | Sbjct 178544 TGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTATGGGCCATCTCTTTGA 178485 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 || | ||||| || |||| ||| || || ||||||||||||||||| | ||| Sbjct 178484 GCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCAAAGATTTGTATATTT 178425 Query 111002 A-TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 | | | | ||||| || || || |||| | || |||| || || || || | Sbjct 178424 AGTAAGCGT-GCTTCTTCGGAGTCGAATGGTAAACGCAACAACATGAAAGTGTCAGCCAA 178366 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 |||||| ||||||||| |||| || ||||||| ||||||||| ||| || ||| || Sbjct 178365 ACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATCTTCTTGCTTCCTCGAC 178306 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| | || | |||||| || ||||| || || | || || | ||||| Sbjct 178305 AGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGATAACTTTAGAAATTTC 178246 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGT------CTCTTCA----TTGACATACTT-- 111228 ||| || |||| | | | | || ||| |||||| || ||| | Sbjct 178245 ATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAGATGTTTCAATAAATGC 178186 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| | || | || ||||| || |||||||| |||||||| | | | ||| || | Sbjct 178185 TGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGAGCGGAGTATTCAAC 178126 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 |||||| || ||||| || ||| || ||||| ||||||||||| ||| | Sbjct 178125 AATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTTTGGTTGGATTTCCT 178066 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 ||| || ||||||||||| | | |||| || || || ||||| |||| || | || Sbjct 178065 GTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTTTGTGCTTCCAATAT 178006 Query 111409 AGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 111467 || | ||| || | | | || | || | || | || || || ||||| Sbjct 178005 AGAGTACCACAATTTTTGGGCCTTG----ATAGTCTTACCACGGCCTTCTTTTTCGTAAC 177950 Query 111468 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC-TTGTCT 111526 || || ||||||||||| || ||||| ||| | ||||| ||| ||| Sbjct 177949 GGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTAAGCCTGGAGCCGATGT-A 177891 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 ||| |||| | || ||| || ||| || || |||||||||||||| || |||| | Sbjct 177890 GGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCGGGAACC 177831 Query 111587 CACAGGGATGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 || || | || || | |||||| ||| || ||||| | ||| || || || | Sbjct 177830 CATAGAGCTGGGAATAAATCTCTCGCACGGA-TTTCTTCCTTACCGTGATTCTTTCTAAT 177772 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC--AAGATAG----ACTGCGATAGA 111699 || | ||| || | |||||| |||||||||||||| || |||| | || || Sbjct 177771 GTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGG 177712 Query 111700 TCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 || ||| | ||| | || | ||||| || || ||| ||| || || || | ||| Sbjct 177711 TCTCTTGTTA---CCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCAT 177655 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 ||||| | || | || || || || || ||| ||| | || | | Sbjct 177654 AGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAAT 177595 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 111879 | || || || | |||||||| ||||| || || || ||||| ||| | | Sbjct 177594 GTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAA 177535 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 ||| | |||||||| | || || || ||||| | || | ||||| || |||||| Sbjct 177534 AGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACAT 177475 Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT- 111998 || || ||||||||||||| ||||| | ||||| | |||||| | || || || Sbjct 177474 TTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGT-AAAGTATTTTA 177416 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||||| || || || || | | | ||||||| || ||||| || || | | Sbjct 177415 GGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAATACCTAAGG 177356 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 |||| | ||||| | || ||||| Sbjct 177355 CGACTCTCATGATTAAGTGTTGTGG 177331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031568228000