Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq2 111 2e-19 >seq4 Length=235297 Score = 185 bits (204), Expect = 1e-41 Identities = 777/1209 (64%), Gaps = 36/1209 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || || || || |||||||| || ||||| || || | || || || ||||| Sbjct 178557 CCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTATGG 178498 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 ||| || | || | || | || || | || || || ||||| |||||||| Sbjct 178497 GCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCAAA 178438 Query 118463 AATGCGAGCATTCATT--GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 118520 || | ||| | | || | || || ||||| || || | | || |||| || Sbjct 178437 GATTTGTATATTTAGTAAGCGT--GCTTCTTCGGAGTCGAATGGTAAACGCAACAACATG 178380 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || || || | |||||||||||| | |||| || | |||||||||||||| | Sbjct 178379 AAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATCTT 178320 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 | || ||| || |||||| | || | || ||||| | |||| || |||| | Sbjct 178319 CTTGCTTCCTCGACAGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGATA 178260 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA--- 118691 || || | |||||||| ||||||| | | | | | | ||| | ||||| Sbjct 178259 ACTTTAGAAATTTCATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAGAT 178200 Query 118692 -TTGACATACTTA--GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || ||| | || | || | || |||| ||||| |||| |||||||| | Sbjct 178199 GTTTCAATAAATGCTGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGA 178140 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | | ||| || | |||||| ||||||||| || ||| || |||||||||||| Sbjct 178139 GCGGAGTATTCAACAATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTT 178080 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || || || ||||||| ||||||||||||| | | || || || || |||||| Sbjct 178079 TGGTTGGATTTCCTGTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTT 178020 Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATC---GGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 || | | | |||| | ||| | | ||| || | | ||| || | || Sbjct 178019 TGTGCTTCCAATATAGAGTACCACAATTTTTGGGC--CTTG-ATAGTC---TTACCACGG 177966 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACG--GCCTCTGAGA 118983 || |||| ||||| || || ||||||||||| || ||||| | | | || | | Sbjct 177965 CCTTCTTTTTCGTAACGGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTA-A 177907 Query 118984 GCCCTGGTGCCTTATCTGGGC-AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 119042 ||| ||| ||| || | || |||| | || ||| || || || || |||||| Sbjct 177906 GCC-TGGAGCCG-ATGTAGGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTC 177849 Query 119043 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 119102 ||||| || || || | ||| || || | ||| | ||| | || |||||| | Sbjct 177848 ATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTA 177789 Query 119103 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 119162 || ||||| | | || | ||||| | |||||| |||||||| || |||| || Sbjct 177788 CCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATAT 177729 Query 119163 ACCGCGATTG-ACCCCTTACGACG--ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 | || | | ||| | | |||| |||||| ||||| | |||||| ||| Sbjct 177728 AGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGTTG 177669 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGAC 119279 || ||||| | ||| ||||| | || | || || || || || ||| ||| Sbjct 177668 AAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAG 177609 Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339 | || | | | ||| || || | ||||||||| || || || || || Sbjct 177608 CCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAA 177549 Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 || || ||| | | | || ||||||| || || || || ||| |||| |||| | ||| Sbjct 177548 GCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGG 177489 Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 || ||| |||||||||||| | ||||||||||||||||| | |||||| | ||||| Sbjct 177488 AAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGA 177429 Query 119460 ATGAACATACCTT-GGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 | || || || |||||||| || ||||| || | |||| ||||| || || Sbjct 177428 GTAAAG-TATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACC 177370 Query 119519 GTGAATACC 119527 ||||||||| Sbjct 177369 GTGAATACC 177361 >seq2 Length=549560 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 167937 CCAGTAGGTGTCTACGGTCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATC 167996 ||||| ||| ||||||| | | ||||||||||| || || || ||||| | ||||| Sbjct 461626 CCAGTCGGTACCTACGGTAGAATCGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATT 461685 Query 167997 CAAGTTGGTGCGGGTGTTGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTC 168056 ||| ||||| |||||||| || |||||| || ||||||||||| || | | || Sbjct 461686 CAAACGGGTGCTGGTGTTGTCGACAGAGACTACACCGGTGAAGTCAAGGTTATCTTATTT 461745 Query 168057 AATCACGGGCACACAGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTA 168116 ||||| || | |||||| |||||||| || ||||| ||||| ||| | ||||| Sbjct 461746 AATCATTCACAGAAGGATTTCGCGATCAAAAAAGGTGATCGTATCGCCCAATTGATCTTG 461805 Query 168117 GAGAGG 168122 || ||| Sbjct 461806 GAAAGG 461811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434774825800