Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242635.1_202017-08-07] 55 sequences; 11,656,823 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq17 136 1e-26 seq26 127 5e-24 seq20 120 7e-22 >seq17 Length=83854 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||||| || || || || || ||| | ||||| ||| || ||| Sbjct 56402 CAGATTTTTGTCAAAACTCTGACCGGTAAGACCATAACCTTGGAGGTTGAATATTCTGAC 56343 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| || ||||||||||| || Sbjct 56342 ACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAACAG 56283 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| || ||||| || ||||| || || || || | ||||| ||| | Sbjct 56282 AGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAACATT 56223 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 56222 CAAAAAGAGTCCACTCTTCA-CTTG 56199 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || || || | ||||| ||| || || Sbjct 56858 CAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCTGAT 56799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || || |||||||| ||||| || ||||||||||| || Sbjct 56798 ACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAACAG 56739 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| || ||||| || ||||| || || || || | ||||| ||| | Sbjct 56738 AGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTGTCGGATTACAACATT 56679 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 56678 CAAAAGGAATCCACTCTTCA-CTTG 56655 >seq26 Length=194426 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || ||| | || || || || ||||| || || || ||| || |||||||| Sbjct 159092 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 159033 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || |||||| |||||||| ||||||||||| ||||| || ||||| ||| || | Sbjct 159032 GACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTG 158973 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAA 178108 ||||| || || || || | ||||| || || || |||| |||| || ||| | ||||| Sbjct 158972 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCCGACTACAACATTCAAAA 158914 Query 178109 AGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || | ||| | || |||||| | ||| Sbjct 158913 GGAATCCACTTTACATTTAGTCTTGAGATTGAGA 158880 >seq20 Length=304555 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| |||||| Sbjct 8674 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCTTCAGAC 8733 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||| ||||| ||||| || || || ||||| ||| Sbjct 8734 ACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAACAA 8793 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | ||||| || || ||| | | || || ||| || Sbjct 8794 AGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTACAACATC 8853 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || | || | || |||||| | ||| Sbjct 8854 CAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGA 8892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730351745670