Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq40 122 1e-22 seq19 105 1e-17 >seq40 Length=705427 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| | || || || || || ||| |||| ||||| | ||| || ||| ||| Sbjct 667909 AAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATTGACAAT 667850 Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 | ||| || |||||||| ||||||||||| |||||||| |||||||| | || ||| Sbjct 667849 GTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATCTTT 667790 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || || || ||||| || || || |||| || || || || |||||||| ||||| Sbjct 667789 GCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAGGAATCC 667730 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || |||||||||| Sbjct 667729 ACTTTACATTTAGTCTTGAGATTGAGAGGTGGTAT 667695 >seq19 Length=415998 Score = 105 bits (116), Expect = 1e-17 Identities = 165/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || |||| || || ||||| ||| ||||| | ||| | | Sbjct 67758 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAGACTATCACTTTAGAGGTCGAATCTTCT 67699 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || |||||||| || || || ||| Sbjct 67698 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAA 67639 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||||||||| |||||| | || ||| || |||| | ||| ||||| Sbjct 67638 CAGAGATTGATTTTTGCAGGGAAACAACTGGAAGATGGTAGAACGCTGTCAGACTATAAC 67579 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAA 124772 |||||||| ||||| || | || ||||| | | || ||||||| |||||| Sbjct 67578 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTGAGACTAAGAGGTGGCAATTAAA 67524 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| || || ||||| ||| | ||| | ||| | | Sbjct 68214 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 68155 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || |||||||| || || || ||| Sbjct 68154 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAA 68095 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||||||||| ||||| || || ||| || |||| | ||||| || Sbjct 68094 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 68035 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || ||||| || | || |||||||||| Sbjct 68034 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTAAGACTAAGAGGTGGTAT 67985 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || ||||| | ||| ||||| | Sbjct 67986 ATGCAGATTTTTGTCAAAACTCTGACCGGTAAGACCATAACCTTGGAGGTTGAATATTCT 67927 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || |||||||| || || || ||| Sbjct 67926 GACACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 67867 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||| || || |||||| | || || || |||| || ||||| || Sbjct 67866 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 67807 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| || ||| | || ||||| || | || |||||||||| ||| || Sbjct 67806 ATTCAAAAAGAGTCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGGTATGCAAATTT 67749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455527840000