Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 seq17 132 5e-26 >seq5 Length=188055 Score = 170 bits (188), Expect = 2e-37 Identities = 520/791 (66%), Gaps = 21/791 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| || |||| |||| | || || | || |||||||| ||||||||| || || Sbjct 53096 TCAATGGTAAATTGAATAGCAGCAGAAGCGGCTTGTGTTCTCAAATAATACATACCGGTC 53037 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || |||| ||||| ||||||||||| || || || | || || | Sbjct 53036 TTTAGACCTTTCTTCCAACCGTAGAAATGCATACTTGTTAGCTTACCCATGGTTGGGGCA 52977 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTAT--AAACGCACCTCTGTCGGCTGCCA 36967 | ||| ||| || || |||||| || ||||| | | ||||||||||| Sbjct 52976 CGCAAGAATAAATTCAAAGAATGGGATTGATCGATGTAAACGG--CACGGTCGGCTGCCA 52919 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | | | ||| ||||| || || |||||||| || ||||| | | ||| | | | Sbjct 52918 TGTTAATGATAGTCTTTTGTGAAATTTCCCAAACAGTCTTATACAAATCTTTCAATTCTT 52859 Query 37028 CTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATT-CTTTATG 37083 ||||| | | ||| |||||| |||||||| ||| | | |||| ||| || Sbjct 52858 GTGGTACGTTTGGTAAACCTTGAATGGAACCATTTTGTGTGATTAGA-TATTGCTTCATA 52800 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 ||| || ||| ||| | | | || | || || || |||||| || || ||| Sbjct 52799 CCATCATCCCAAATACCCAAATCAACCAAATCACGCAGTAAGTATGGATTGACGACTTGA 52740 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || ||||||| || | | | || || ||| |||| |||||| | |||| Sbjct 52739 AATTCACCAGATAGAACACGACGAGAGTACATGTTGGAAGTAACTGGTTCGAAACACTCG 52680 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTAT 37261 || | || ||| || || || || |||||||||||||| ||||| || | ||| | Sbjct 52679 TTGTAACCTAAAATCTGGGAAGTGGATGCAGTAGGCATAGGTGCCATGGTCAAAGAGT-- 52622 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTT---AGTTCATTCCAATCCCATAAATCTG 37318 |||| | ||||| | | || || ||| | ||| || ||||||||| | | | | Sbjct 52621 TTCTAACACCATGCTTCATGATG-TCATTTCTCAAAGT--ATCCCAATCCCACATACC-G 52566 Query 37319 TTGGGTTCTTTAACC-ACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 | |||| || || |||| || |||| || ||||||| | |||||||| | | Sbjct 52565 TAAGGTTTTTCGTCCCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGG 52506 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 | || || || || || | ||| |||||| || ||| | ||| | | |||| Sbjct 52505 AAGGTTTCGTATGGGCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGG 52446 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAG 37497 || || ||||| || ||||||||||||| || |||||||||| ||||||| | Sbjct 52445 TACATGGTTTCAAAGATTTGTATATTTAGTAAGCGTGCTTCTTCGGAGTCGAATGGTAAA 52386 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | ||| || || || ||||||||||| || ||||| | | | || || || ||| || Sbjct 52385 CGCAACAACATGAAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTC 52326 Query 37558 TTATTAGATCT 37568 |||||||||| Sbjct 52325 ATATTAGATCT 52315 Score = 168 bits (186), Expect = 6e-37 Identities = 414/625 (66%), Gaps = 2/625 (0%) Strand=Plus/Minus Query 38010 TTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGT 38069 || ||| || || | ||| || | ||| || ||||||| || | ||||||||| | | Sbjct 51858 TTCTTCGACACGCTTCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGC 51799 Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129 | |||||| || || ||||||||| | | | || ||||| ||||||||||| Sbjct 51798 ACGGATTTCTTCCTTACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTG 51739 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 |||||| || | ||| | | | || || ||||| || | ||| ||||| | || ||| Sbjct 51738 CCATGGCTCCAAATATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATA 51679 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 | | ||||| || | | | | |||||| | || || ||||| | ||||| | Sbjct 51678 ACGGGCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGT 51619 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309 ||| | || |||| || | || || || || || | || || ||||| || Sbjct 51618 ACCAGCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGC 51559 Query 38310 ATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369 | ||| || || ||||| |||| || || || || | |||||||| || ||||| Sbjct 51558 AGTTTTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATC 51499 Query 38370 CTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAA 38429 ||| |||| | || ||||| |||||||||||| ||| || || ||||| ||||| Sbjct 51498 CTTCATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAA 51439 Query 38430 TGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC 38489 || ||||| || || | || ||||| |||| | ||||| ||||||| | | Sbjct 51438 AGTTGGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGC 51379 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || || | | | ||||||||||||| | || ||||| | | |||||||| | ||| Sbjct 51378 CTCAATGTTATCACCGTGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTC 51319 Query 38550 TATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | || | || | | | || ||||| |||||| ||||| | || || || Sbjct 51318 AGCAACTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTA 51259 Query 38610 ACTATA-TGAATAATCTCTATCGTA 38633 ||| || |||| ||||||| || || Sbjct 51258 ACTGTACTGAA-AATCTCTGTCATA 51235 >seq17 Length=290845 Score = 132 bits (146), Expect = 5e-26 Identities = 520/802 (65%), Gaps = 37/802 (5%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 || || | || |||||||| || ||||| ||||| ||||| ||| |||| ||||| Sbjct 197054 GAAGCAGCTTGTGTTCTCAAGTAGTACATACCAGTCTTTAGACCCTTCTTCCAACCGTAG 196995 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTA---GGATTATCTATATATATTGTCATTGAT 36930 ||||||||||| || | |||| | || | ||||| | | | ||| || || Sbjct 196994 AAATGCATACTTGTAA-TTTTACCCATTGATGGGGATTGTAGGAAAAGATT--CAAGGAG 196938 Query 36931 TGACTTTGATCTAT--AAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAG 36988 || |||||| || ||| | | | | | || ||||| | | ||| ||||||| Sbjct 196937 TGGGATTGATCAATGTAAATGGAACGAT--CAGCAGCCATGTTGATAATGGTCTTTTGAG 196880 Query 36989 ATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTT 37045 | || |||||||| |||||||||| | ||| | | | || | | | || | || Sbjct 196879 AGATTTCCCAAACAGTTTTATATAAATCTTTCAAGTCTTGAGGAACGTTTGGTAAGTCTT 196820 Query 37046 GAATAGAACCATTATG--TAACACAATTGTATTCTTT-ATGTCATTATTCCACATATTTC 37102 ||| |||||||| || ||| ||| ||| ||| || || || ||| ||| | Sbjct 196819 TAATGGAACCATTTTGAGTAATCAAAT---ATTGTTTCATACTATCATCCCAAATAC--C 196765 Query 37103 TACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATAC 37160 | | | | || | | || || |||||| || || || || || |||||||| || Sbjct 196764 CAGGTCGACCAAATCACGTAGTAAGTATGGATTGACGACTTGGAATTCACCAGATAAGAC 196705 Query 37161 TCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTG 37220 | | | || || || ||| |||||| | | ||||| | | | ||||| Sbjct 196704 ACGACGAGAGTACATGTTTGAAGTGACTGGTTCGAAACATTCATTGTACCCAAGAATTTG 196645 Query 37221 AGATGTAGATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGTA 37278 |||||||| || || |||||||| || || | ||| | |||| || |||||| | Sbjct 196644 GGATGTAGAAGCGGTTGGCATTGGGGCCATGGTTAAAGAGT--TTCTTAACCCATGTTTG 196587 Query 37279 TTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACA 37336 ||| ||| |||| | ||||||||| | | | ||| || | || ||||| Sbjct 196586 ACAATGTCCTTCTTTAAAGTGTCCCAATCCCACATACCAAATGGCTTAGCATT--CCACA 196529 Query 37337 TATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGT 37396 | || |||||| |||||| ||| || ||||| | | | | || ||| || | Sbjct 196528 TGTCGAATTGTAAAATACCCTTAGAGGCAGGAGAGCCTTCAAAAGTGGAATATTTACCTT 196469 Query 37397 AAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTT 37456 ||| ||||| ||| ||| || ||| || | ||||| || || ||||||||||||| Sbjct 196468 CCTTTTGAGCTAATTCACAAGAAGCTTCAAGGGTGGCATGGTAAATAGTTTCGAAAATTT 196409 Query 37457 GTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACAT 37516 | |||| | ||||| |||| ||| | || |||| | | || | ||| | || Sbjct 196408 GCTTATTAAGTATTTGAGCTTTTTCACATTCAAATGGTAAACGCAGCATCATATAGGTAT 196349 Query 37517 CAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA---TCTAGACG 37573 | |||||||| ||||| || | | || ||||| ||| || ||||||| ||||| | Sbjct 196348 CTGCCAAACCTTGAACCCCCAGGGCAATAGGTCTGTGTCTCATATTAGAGTTTCTAGCC- 196290 Query 37574 ATTCTATCACTGGATAATAATT 37595 ||| |||||||||||| || Sbjct 196289 --TCTGGCACTGGATAATAGTT 196270 Score = 86.0 bits (94), Expect = 6e-12 Identities = 286/445 (64%), Gaps = 0/445 (0%) Strand=Plus/Minus Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTT 38065 |||| | ||| || || | ||| || | |||||| | ||||| |||| || |||||| Sbjct 195844 CATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGGGCAGGGAACAAATCTC 195785 Query 38066 TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125 | | | | |||||| || || | | ||||| | | ||| ||||| || || | Sbjct 195784 TTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAACAAAGTCGAAGATGTCTG 195725 Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185 | |||||||| || | ||| | | || || ||||| || | ||| || || | | Sbjct 195724 CATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCA 195665 Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245 || | | |||||||| | | | | ||| || | | ||||| || | |||| Sbjct 195664 CGTAACGTGCAGTGTTATTGAAGACACGGATCATGGGAATCAACCCATTTGAAGTACCGT 195605 Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCAC 38305 | |||| | ||||||| || | | || ||||| | || | || | |||| Sbjct 195604 TGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCAC 195545 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 ||||| || || || | || || | ||| || || || | |||||||| || || Sbjct 195544 CTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCGATGGAGT 195485 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | ||||| || | | | |||||| |||||||||||| ||| || ||||| |||| Sbjct 195484 CGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTGTGGCGTACCGGCATTAA 195425 Query 38426 ATAATGTAGGAGATGCATGTATGAA 38450 ||| || || || || || |||| Sbjct 195424 ATAGAGTGGGGGAAGCGTGAGTGAA 195400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524507172000