Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq19 176 1e-38 seq40 147 5e-30 seq16 147 5e-30 seq24 138 3e-27 seq14 134 3e-26 >seq19 Length=415998 Score = 176 bits (194), Expect = 1e-38 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||||||| || || || | || | |||||||| || ||||| |||||||| || Sbjct 67532 CCACCTCTTAGTCTCAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCTGAC 67591 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||||||| ||||| |||||||| || |||||||| | |||||||| || ||||| Sbjct 67592 AGCGTTCTACCATCTTCCAGTTGTTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGAGGA 67651 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || ||||| ||||| || ||||| |||| ||| || || ||| ||| Sbjct 67652 ATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCGACC 67711 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || |||||||||||||| | ||||| ||||| || ||||| Sbjct 67712 TCTAAAGTGATAGTCTTACCAGTTAAAGTTTTGACAAAAATTTGCAT 67758 Score = 168 bits (186), Expect = 2e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || | || | || ||||| || ||||| || || || Sbjct 68213 ATACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCC 68272 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| |||||||| ||||| ||||| | ||||||||| || ||| Sbjct 68273 GACAGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGA 68332 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || | || || || || | ||||| || ||| Sbjct 68333 GGAATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCG 68392 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||||| | ||||||||||||||||| ||||| || || || || ||||| ||| || Sbjct 68393 ACCTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCATAGTGTCTA 68450 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || | || | || || ||||| ||||| || || || Sbjct 67757 ATACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCC 67816 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||||||||| |||||||| ||||| ||||| | ||||||||| || ||| Sbjct 67817 GATAGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGA 67876 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| | || || || || | ||| || | ||| Sbjct 67877 GGAATACCTTCCTTGTCCTGGATCTTAGACTTGACGTTATCGATGGTGTCAGAATATTCA 67936 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || |||||||| || || ||||| ||||| |||||||| Sbjct 67937 ACCTCCAAGGTTATGGTCTTACCGGTCAGAGTTTTGACAAAAATCTGCAT 67986 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || || || | || | |||||||| || ||||| || || || Sbjct 67985 ATACCACCTCTTAGTCTTAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCC 68044 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||| ||||| | ||||| || |||||||| | |||||||| || ||| Sbjct 68045 GACAGCGTTCTACCATCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGA 68104 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || ||||| |||| ||| || || ||| Sbjct 68105 GGAATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCG 68164 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || |||||||||||||| || ||||| ||||| |||||||| Sbjct 68165 ACCTCCAAAGTGATAGTCTTACCAGTTAGAGTTTTGACAAAAATCTGCAT 68214 >seq40 Length=705427 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || ||||| || ||||| Sbjct 667695 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG 667754 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 667755 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 667814 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| | ||| ||||| || | ||| || || ||| Sbjct 667815 GGGATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCA 667874 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||||| || || ||||||||||| Sbjct 667875 ACTTCTAGAGTGATGGTCTTACCAGT 667900 >seq16 Length=189800 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || || || || |||||| Sbjct 50846 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 50787 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| |||| || ||||| |||||| Sbjct 50786 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGA 50727 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 50726 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 50667 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | ||||| ||||| Sbjct 50666 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 50626 >seq24 Length=351367 Score = 138 bits (152), Expect = 3e-27 Identities = 290/428 (68%), Gaps = 21/428 (5%) Strand=Plus/Plus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || |||||||| |||||||| | || ||||| |||| ||||| ||||| || || Sbjct 16960 GACGGTATCGTCAACGAAAACTTGGTCGAGAACTTCTCCACCGAGGTCCAGATCCCGGAG 17019 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 |||| |||| ||||| |||||||| || || || || || || || || | ||| Sbjct 17020 GCCAAGAGTTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAAACCTACTCC 17079 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | || || || || || || | || ||| |||| || | | || ||| | | Sbjct 17080 TTGTTGATCGACACCTACATCAAGGACCCCAAGGAAAGC----GAGT-TCTTGTTCAACG 17134 Query 269057 AGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA 269107 | || || | | | || ||||| | |||||||| || | |||||| Sbjct 17135 CCATCGACACCATCCCAGAAATCTGCGAGAAGG----CCGAATGGGCCCTTAGATGGATC 17190 Query 269108 AACGATAGCGCG--CCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATA 269164 | || || ||| | ||| ||||| | || || || ||| | | |||||| | Sbjct 17191 CAGGACGCCGATGCCCTGTTCGGTGAAAGACTGGTCGCGTTCGCCTCCATCGAAGGTGTC 17250 Query 269165 TTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA 269224 ||||| || ||||| || ||| | ||||| ||||||||||||||||| | ||||| || Sbjct 17251 TTCTTCTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAAAGAGGTATGATGCCCGGT 17310 Query 269225 TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || || ||||| |||||| |||| |||| ||||||||||| ||| |||||| || ||| Sbjct 17311 TTGACCTTCTCCAACGAACTGATCTGCAGAGACGAAGGTTTGCACACCGACTTTGCCTGT 17370 Query 269285 TTATTATT 269292 || || || Sbjct 17371 TTGTTGTT 17378 >seq14 Length=538356 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || || || || || || || |||||||| | |||||| |||||||| | ||| Sbjct 529486 TGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCCAATTGC 529545 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || |||||||| Sbjct 529546 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTA 529605 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| || || ||| || || || |||||||||||||| || Sbjct 529606 GACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTACCGGTT 529665 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 529666 AAAGTCTTGACGAAAATTTGCATCTTG 529692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397662385400