Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq14 100 3e-16 seq3 84.2 3e-11 >seq14 Length=538356 Score = 100 bits (110), Expect = 3e-16 Identities = 291/452 (64%), Gaps = 27/452 (6%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 |||||| || | |||| | |||||| ||| | ||| ||||| || | |||||||| Sbjct 121436 TTGTTCCTTCAAGGCTTCAACATGATCCTTATACACATGCGCATCCCCCAAAGTATGAAT 121495 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 || ||||| |||| |||||| || ||| |||||| | || || | ||||| || Sbjct 121496 GAACTCACCCGGTTCCATATCGACGACTTTAGCAATCATTCTGGTCAACAGGGCATATGA 121555 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATA------ACAT-- 6981 || | |||||| || ||||||| |||||||| || | || || |||| Sbjct 121556 GGCAATATTAAATGGCACACCTAGCCCCATATCACAGGAACGCTGGTATAACAAACATGA 121615 Query 6982 ----------TGACAAGATAAAATATTGTCTATAG---------CATAAAATTGACACAA 7022 | || | | | | || ||| | | ||||||| || | || Sbjct 121616 AAGGCGAGGCTTACCACTTCCACTTTTCTCTTTGGGGAAACTGACATAAAACTGTGAAAA 121675 Query 7023 TACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAA 7082 | ||| ||||| |||||| | || || | ||| | |||||||||||| |||| | Sbjct 121676 AATATGGCATGGTGGTAAAGCCATCTTGTCAAAATCTGCAGGATTCCAAGCACTCATGAT 121735 Query 7083 AATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTAT 7142 ||| | |||||| | || |||||||||||||| ||||| | | ||||| || Sbjct 121736 AATTCTTCTATCGTAAGGGTTTGTTTTTAATTTGTGTATAACCTGCTTCAGCTGATCGAT 121795 Query 7143 ACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTG 7202 || || || ||| | | || || | | || | || || |||||||||||||| Sbjct 121796 GCCTTGTCCGGTATAGTCATCATCGCACGTCTTGTATTGGGCACCGAAATGTCTCCATTG 121855 Query 7203 AAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||||||||| || || | || ||| ||| Sbjct 121856 GAACCCATAAACGGGGCCCAGGTCTCCTACTT 121887 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417 ||| |||| ||||| || || |||||| | || |||||| || || |||||| | Sbjct 261703 CCTCAAATCGGTGACAAATTCGCTTCTCGTCATGGTCAAAAGGGTACTATTGGTATCACA 261644 Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAAC 19477 |||||| |||||||||||| ||||| ||| ||||| || || ||| | ||||| || Sbjct 261643 TATCGTAGAGAAGATATGCCATTTACAGCAGAAGGTATCGTACCAGATTTAATTATCAAT 261584 Query 19478 CCACATGCTTTTCCAAGTCGAATGAC 19503 || |||||| ||||| ||| ||||| Sbjct 261583 CCTCATGCTATTCCATCTCGTATGAC 261558 >seq3 Length=553868 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/288 (67%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 || |||||||| | || ||||||| |||||||| || | ||||||||||| | Sbjct 138780 GTAGTTAATCAACTACTGGCTAAAATGGATGGTGTTGATCAACTGAATAATATTTTGGTC 138721 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | ||||||||||| || ||||| || ||| |||| | ||||| || ||| |||| Sbjct 138720 ATCGGTATGACCAATCGTAAAGATTTGATCGATATTGCTCTTTTACGTCCAGGTAGATTC 138661 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||| | | | ||||| ||||| ||| || |||| | || || ||||| | || Sbjct 138660 GAAGTTCAGGTTGAAATTCATTTACCGGACGAAAAAGGTAGACTGCAGATTTTTGACATT 138601 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATAT-ATTATCTCCCGATGTAGATTTAAATAAAAT 165032 || | ||||||| | | |||| || | | |||||| | ||| | || | Sbjct 138600 CAAACGAAGAAAATGAGAGAAAATAATATGATGAGC-GACGATGTTAACTTAGCTGAACT 138542 Query 165033 AGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGT 165080 ||| || |||||| |||| | ||||||||| | || || ||||| Sbjct 138541 AGCAGCTTTAACTAACAATTTTTCCGGTGCTGAAATTGAAGGTTTAGT 138494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871627580000