Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 170 5e-37 seq17 159 9e-34 >seq5 Length=188055 Score = 170 bits (188), Expect = 5e-37 Identities = 1031/1639 (63%), Gaps = 41/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || |||||| | ||||| | | ||| ||||| || | || || || ||||| || Sbjct 51418 TTTACTCACGCCTCTCCAACTTTATTCAACGCTGGTACACCAAAGCCTCAAATGTCCTCC 51477 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||||||||| |||||||| || ||||||| ||||| | ||| | Sbjct 51478 TGTTTCCTAGTTGCAATGAAGGATGATTCCATTGAAGGTATCTACGACACTTTGAAGGAA 51537 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| | |||||||| | ||| || || |||||| || || ||||| |||||||| Sbjct 51538 TGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATTCACAACATTCGTGCA 51597 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | ||||||| || || | |||| || || ||| | |||| ||| | || Sbjct 51598 ACCGGCTCTTACATTGCTGGTACGAACGGGACT-TCTAACGGGTTAATTCCTATGATCCG 51656 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| ||||| | || || ||||||||||| ||| | || || || Sbjct 51657 TGTCTTCAACAACACTGCCCGTTATGTTGACCAGGGTGGTAACAAGAGACCTGGTGCCTT 51716 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 |||| | ||| | ||||| || || ||||| || || || | || | | || || Sbjct 51717 TGCTCTATATTTGGAGCCATGGCACGCTGATATCTTCGACTTCATCGACATTAGAAAGAA 51776 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||| || || || ||| | ||||| | ||| | ||| || || |||||| | || | Sbjct 51777 TCAC-GGTAAGGAAGAAATCCGTGCGAGAGATTTATTCCCAGCTCTATGGGTTCCCGATC 51835 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTT-TTGCCCACA-CGAATG 364022 ||| |||||||| || || | | | |||| | | || | || ||| || Sbjct 51836 TTTTCATGAAGCGTGTCGAAGAAAACGGCACTTGGACTTTATTCTCTCCTACATCG--GC 51893 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 |||||| | || | |||||||| | || || ||||| || ||| Sbjct 51894 TCCAGGCTTAAGTGACTGCTACGGTGACGAATTTGAAGCCCTATATACCCGTTACGAA-- 51951 Query 364083 GGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | ||| | | | ||||||| || || || || | |||| | || |||| Sbjct 51952 --AAAGAAGGCCGTGGTAAGACTATCAAGGCCCAAAAATTGTGGTACTCTATATTGGAAG 52009 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || || || ||||||| | | | ||||| ||| | || ||| | || |||| Sbjct 52010 CACAAACGGAAACTGGTACACCCTTTGTTGTTTACAAGGATGCTTGTAACAGGAAATCCA 52069 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || || | ||| || || | ||| | || || ||| |||||||| Sbjct 52070 ACCAAAAGAACTTGGGTGTTATCAAGTCGTCTAACTTGTGCTGTGAAATTGTTGAATACT 52129 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-- 364319 ||||||| || |||||||| || |||||| | || || | || | || || ||| | Sbjct 52130 CCGCTCCAGATGAGACTGCTGTTTGTAACTTGGCTTCTGTTGCTTTGCCAGCATTTATTG 52189 Query 364320 AA-------AAGATGG---------TACTTTTGACCACCAGCATCTTTATGACGTAACCT 364363 || |||| || ||| | | || | | | || |||| || | Sbjct 52190 AAACATCTGAAGACGGCAAAACTTCTACATATAACTTCAAAAAGCTACATGA---AATTT 52246 Query 364364 ATCATGCT---ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTG 364420 | | | | ||| | || | |||| ||||| ||| || |||||||| | | Sbjct 52247 CTAAAGTTATCACTCGTAACTTAAACAACGTTATTGACCGTAACTATTATCCTGTCGAGG 52306 Query 364421 AAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTG 364480 |||| | ||||||||| | || | ||||||| | | ||||| || || | |||| Sbjct 52307 AAGCAAGAAGATCTAATATGAGACACAGGCCGATTGCTTTGGGTGTCCAAGGTTTGGCTG 52366 Query 364481 ACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGG 364540 || ||| ||| || | | |||| || || || || || | ||||||| Sbjct 52367 ACACTTTCATGTTGTTGCGTTTACCATTCGACTCCGAAGAAGCACGCTTACTAAATATAC 52426 Query 364541 AGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCA 364600 | ||||||||||| ||||| ||| | ||| || || ||||| | || ||| Sbjct 52427 AAATCTTTGAAACCATGTACCATGCTTCCATGGAAGCCTCTTGTGAGCTAGCTCAAAGAG 52486 Query 364601 AGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATC 364660 | || ||| || | | || || || ||| || || | | | || || || Sbjct 52487 ATGGCCCATACGAAACCTTCCAAGGCTCTCCAGCTTCTCAAGGTATACTTCAATTCGACA 52546 Query 364661 TATGGAATGTCACGCCAT-CTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAG 364719 | ||| | | | || | | || | ||| | |||||||| | | || | | | Sbjct 52547 TGTGGGACGAAAAACCTTACGGTATG-TGGGATTGGGATACTTTGAGAAATGACATCATG 52605 Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 ||||||||| | | ||||| | | || || ||||| || || || ||| | ||| Sbjct 52606 AAGCATGGTGTTAGAAACTCTTTGACCATGGCACCTATGCCTACTGCATCCACTTCCCAG 52665 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || | || |||||||||| |||||||| |||| ||| | || || || || ||| Sbjct 52666 ATTTTAGGTTACAACGAGTGTTTCGAACCAGTTACTTCCAACATGTACTCTCGTCGTGTT 52725 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || || || ||||||| || || ||| ||| || | ||| | || || Sbjct 52726 CTATCTGGTGAATTTCAAGTCGTCAATCCATACTTACTGCGTGATTTGGTTGATTTGGGT 52785 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 | |||| ||| | |||||| | ||| | ||| | |||||||| | || | Sbjct 52786 ATTTGGGATGATGGTATGAAGCAATATCTAATCACACAAAATGGTTCCATTCAAGGTTTA 52845 Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCG 365018 ||| | ||| |||| |||| | | || || || || ||||||||||| || | Sbjct 52846 CCAAACGTACCACAAGAATTGAAAGATTTGTATAAGACTGTTTGGGAAATTTCACAAAAG 52905 Query 365019 AACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAA 365078 ||| ||||| | ||||| ||||| || | | || ||| ||| ||| || || || Sbjct 52906 -ACTATCATTAACATGGCAGCCGACCGTGCCGTTTACATCGATCAATCCCATTCTTTGAA 52964 Query 365079 CGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 ||||| || | |||||| | ||||| ||| |||||||||||||| ||||| Sbjct 52965 TTTATTCTTGCGTGCCCCAACCATGGGTAAGCTAACAAGTATGCATTTCTACGGTTGGAA 53024 Query 365139 ATCCGGTCTTAAGACAGGT 365157 ||||| ||||| ||| Sbjct 53025 GAAAGGTCTAAAGACCGGT 53043 >seq17 Length=290845 Score = 159 bits (176), Expect = 9e-34 Identities = 510/779 (65%), Gaps = 13/779 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | || || | | ||||| || || | | || || ||||||||| Sbjct 195400 TTCACTCACGCTTCCCCCACTCTATTTAATGCCGGTACGCCACACCCTCAAATGTCTTCT 195459 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||||||||||| |||||||| ||||| | ||||| | || | Sbjct 195460 TGTTTCCTGATTGCCATGAAGGACGACTCCATCGAAGGTATTTACGACACTTTGAAAGAG 195519 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGC 363725 ||||| | |||||||||| |||||| || ||||| | ||| ||||| |||| | | Sbjct 195520 TGTGCCATGATTTCCAAGACTGCAGGTGGTGTTGGTCTTCATATCAACAATATTCGTTCC 195579 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 |||| | ||| ||| || || || ||| || |||||| || |||||||| | | Sbjct 195580 ACAG-GCTCTTATATTGCAGGTACCAACGG-TACTTCAAATGGGTTGATTCCCATGATCC 195637 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| || | || ||||| | ||||| ||||| ||||| ||| | || || | Sbjct 195638 GTGTCTTCAATAACACTGCACGTTACGTGGACCAAGGTGGTAACAAGAGACCCGGTGCCT 195697 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| | | | ||||| ||||| || || || || ||| |||| | | ||||| Sbjct 195698 TTGCCCTTTTCTTGGAGCCATGGCATGCAGACATCTTCGACTTTGTTGATAT-CAGAAAA 195756 Query 363905 ACAC-GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || | || || || ||| | |||||| | ||| ||||| ||| || ||| || |||| Sbjct 195757 ACTCATGGTAAGGAAGAAATTCGTGCAAGAGATTTGTTCCCTGCCCTATGGATTCCTGAT 195816 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG- 364022 | ||| |||||||| || || | | | | ||| | || |||| ||| | || Sbjct 195817 CTTTTCATGAAGCGTGTCGAAGAGGATGGGGCCTGGACCCTATTTTCACCA-AGTTCTGC 195875 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 |||||| | ||| || |||||||| || | | | |||||| || ||| Sbjct 195876 CCCAGGTTTGGACGACGTTTGGGGTGAAGAATTCGAAGAGCTATACACCCGTTACGAA-- 195933 Query 364083 GGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 || ||| | | | |||| || || || || || | |||| |||||| | | Sbjct 195934 --AGAGAAGGTCGTGGTAAAACCATCAAGGCCCAAAAAGTGTGGTACGCCATCTTACAAG 195991 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || || || || || | ||| | |||||||| | || ||| | ||| ||| Sbjct 195992 CACAAACAGAAACCGGTACGCCATTCATGGTTTACAAAGACGCTTGTAACAGAAAGACCA 196051 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 ||||||| || | ||||| || | | || || ||| ||| || | || || Sbjct 196052 ACCAGCAAAACTTGGGTACTATCAAATCGTCGAATCTGTGTTGCGAAATCGTCGAGTATT 196111 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 | | || || || || || || |||||| | || || || || || || || |||||| Sbjct 196112 CTTCCCCAGATGAAACAGCTGTTTGTAACTTAGCTTCCATTGCCCTACCAGCATTTGTA 196170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352765039100