Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07]
50 sequences; 11,623,528 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq14 123 2e-23
seq16 122 6e-23
seq40 109 4e-19
seq19 107 1e-18
seq41 86.0 4e-12
>seq14
Length=538356
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| ||||| || | |||| ||||||||| || ||||| |||||
Sbjct 529461 ACCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGA 529520
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| | |||| || ||||| || || ||||| || | | |||||| || | ||
Sbjct 529521 CAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 529580
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| ||| || ||| ||||| | | || ||| | ||||||
Sbjct 529581 AATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAAC 529640
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| | |||||||| ||||| || || || || ||||| || ||||| ||
Sbjct 529641 TTCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 529691
>seq16
Length=189800
Score = 122 bits (134), Expect = 6e-23
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || ||||| | |||| |||||||| || ||||| ||||
Sbjct 50845 TACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 50786
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | |||| || ||||| || || ||||| |||| | |||||| || | |
Sbjct 50785 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAG 50726
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| ||||| ||| ||| ||| ||||| | | ||| || | |||||
Sbjct 50725 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 50666
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308
|||| || || || || ||||| ||||| ||||| || ||
Sbjct 50665 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 50626
>seq40
Length=705427
Score = 109 bits (120), Expect = 4e-19
Identities = 156/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || ||||| | |||| ||||||||||| ||||| || |
Sbjct 667696 TACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGG 667755
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | |||| || ||||| || || ||||| || | | |||||| || | |
Sbjct 667756 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 667815
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||||||||| ||| || || ||||| | | || || | |||||
Sbjct 667816 GGATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAA 667875
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308
|||||| || || || ||||| ||||| || || |||||
Sbjct 667876 CTTCTAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 667915
>seq19
Length=415998
Score = 107 bits (118), Expect = 1e-18
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| | | | ||||| ||||||||| ||||||||||| |||||||| |
Sbjct 68214 TACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCCG 68273
Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
||| |||| |||| || | |||||| || || || || | | ||||| ||
Sbjct 68274 ACA----GCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCC 68329
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| || | |||||| |||||| ||||| ||| || || | || |||||| | |
Sbjct 68330 GGAGGAATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGAT 68389
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || |||||||| ||||| |||| || || ||||| || |||||
Sbjct 68390 TCGACCTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCAT 68442
>seq41
Length=1011639
Score = 86.0 bits (94), Expect = 4e-12
Identities = 202/295 (68%), Gaps = 10/295 (3%)
Strand=Plus/Plus
Query 6199 CGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258
|||||||||| ||||||||||| | ||| || |||||||| |||| || |||||||
Sbjct 526403 CGTTCTACCGTTACAAAATGCCTCCAATCCAGGCTAAGGTCGAAGGTAGAGGTAACGGTA 526462
Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC-GCCCTGCCACC 6317
| ||||| | || | ||| || |||| |||| | ||| | | || | |||||| |
Sbjct 526463 TCAAAACAGCAATCCTGAACGTGGCTGACATCGCCCATGCG-TTGAACAGACCTGCCCCA 526521
Query 6318 TAC-CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA-CAAAA 6375
||| || | || || ||||| | |||||| || ||||| || | | | || | | |
Sbjct 526522 TACATCGTC-AAGTACTTCGGTTTCGAACTGGGTGCTCAAAC-CTCTATCTCCATCGACA 526579
Query 6376 ACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACG 6435
| || || | | |||||||| ||| | |||| ||| |||| ||| | | ||||
Sbjct 526580 AAGATCGTTATTTGGTTAACGGTGTTCATGAACCTGCTAAGTTGCAAGACGTGTTGGACG 526639
Query 6436 GCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA--TGCGATAACCCGGAGACCGAG 6488
| || || || |||||| || ||| |||| || | || || || ||||||
Sbjct 526640 GGTTCATCAACAGGTTTGTTCTTTGT--GGAAGTTGTAAGAATCCAGAAACCGAG 526692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946995891550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |