Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq24 273 4e-68 >seq24 Length=351367 Score = 273 bits (302), Expect = 4e-68 Identities = 593/873 (68%), Gaps = 26/873 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCAT-GTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 ||| || |||| || |||||| | || ||||||| || || |||| |||||| || Sbjct 16798 ATCCAGTACCACGAGATCTGG-CAATCGTACAAGCGTGCCGAGGCCTCCTTCTGGACTGC 16856 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTC---ACTGTCTGAGAACGA 42400 |||||| || ||| || ||||||||| || |||| | | || || ||||| Sbjct 16857 CGAGGAAATCGACTTGTCCAAGGACATCCACGACTGGAACAACAGAATGAACGAAAACGA 16916 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 || || ||| || | | || ||||||||||||||||| ||||| || ||||| || Sbjct 16917 AAGATTCTTCATCTCCAGAGTGCTTGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGA 16976 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 ||| ||| | | ||| | ||||| ||| | ||||| | |||||||| Sbjct 16977 AAACTTGGTCGAGAACTTCTCCACCGAGGTCCAGATCCCGGAGGCCAAGAGTTTCTACGG 17036 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 |||||||| || || |||||| | ||||| || ||| || || || |||| || Sbjct 17037 GTTCCAGATCGCGATCGAGAACATCCACTCCGAAACCTACTCCTTGTTGATCGACACCTA 17096 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| ||| ||| || | | ||||||| ||||| || || || || || Sbjct 17097 CATCAAGGACCCCAAGGAAAGCGAGTTCTTGTTCAACGCCATCGACACCATCCCAGAAAT 17156 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 | ||||||| || ||||| || | |||||| || |||| || |||||| || Sbjct 17157 CTGCGAGAAGGCCGAATGGGCCCTTAGATGGATCCAGGACGCCGATGCCCTGTTCGGTGA 17216 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 || ||||| || || || || |||| || |||||||||| || ||||||||||||| Sbjct 17217 AAGACTGGTCGCGTTCGCCTCCATCGAAGGTGTCTTCTTCTCCGGGTCCTTCGCCTCCAT 17276 Query 42761 CTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||| | ||| | | |||| | ||||||||| | |||||||| |||||||| ||| Sbjct 17277 CTTCTGGTTGAAGAAAAGAGGTAT-GATGCCCGGTTTGACCTTCTCCAACGAACTGATCT 17335 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 |||| ||||| || |||| | ||||||||||| | ||||| | |||| | | Sbjct 17336 GCAGAGACGAAGGTTTGCACACCGACTTTGCCTGTTTGTTGTTCGC---CCACTTGAAAA 17392 Query 42880 ACAAGCCCTCGAAGGAGC--GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA--G 42935 ||||||| || ||| ||| | ||| |||| |||||||| |||||||| Sbjct 17393 ACAAGCC--GGACCCAGCCATCGTCGAGAAAATCGTCACCGAGGCCGTCGAGATCGAACA 17450 Query 42936 AAG-GAGTTCCTCACGCAGTCGC--TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| | ||||| || ||| |||| || || || | || |||||| |||| | Sbjct 17451 AAGATACTTCCT-----AGACGCCTTGCCAGTCGCCTTGCTAGGTATGAACGCCGACTTG 17505 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC 43052 ||| | | ||| || ||| |||||| ||| ||| || | | ||| || Sbjct 17506 ATGAACCAATACGTCGAGTTCGTCGCAGACAGACTCTTGGTCGCCTTCGGTAACAAGAAG 17565 Query 43053 CTCTACAA-CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 |||||| || | ||||||||| || ||||| ||||| || |||| || ||||| Sbjct 17566 TACTACAAGGTCGAC-AACCCCTTCGATTTCATGGAAAACATTTCCTTGGCCGGTAAGAC 17624 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||| ||||| ||| | ||| |||||||||| Sbjct 17625 CAACTTCTTCGAAAAGAGAGTCTCCGACTACCA 17657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338609788000