Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq19 116 3e-21 seq40 111 1e-19 seq14 111 1e-19 seq16 104 2e-17 seq17 82.4 7e-11 >seq19 Length=415998 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAGAATCGTCCAATT 45195 || || || ||||||||||| || ||||| | ||||| ||| || ||| |||| || Sbjct 67556 TGAAGGGTAGATTCCTTTTGAATGTTATAGT--CTGACAGCGTTCTACCATCTTCCAGTT 67613 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| ||||| | ||||||| || ||||| || ||||| ||||| || || || || | Sbjct 67614 GTTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCT 67673 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | || | |||| |||||| ||||| ||||| || | ||| | || || || | Sbjct 67674 TACTCTTCACATTGTCTATGGTGTCAGAAGATTCGACCTCTAAAGTGATAGTCTTACCAG 67733 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||| |||||||||||||| Sbjct 67734 TTAAAGTTTTGACAAAAATTTGCAT 67758 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | ||| || ||| ||||| ||| Sbjct 68012 TGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTACCATCTTCCAACTGT 68071 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||||| || ||||| || ||||| ||||| || || || || || Sbjct 68072 TTACCTGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTA 68131 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| |||||| ||||| ||||| || | ||| | || || || ||| Sbjct 68132 CTCTTCACATTGTCTATGGTGTCAGAAGATTCGACCTCCAAAGTGATAGTCTTACCAGTT 68191 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 |||||||| |||||||| ||||| Sbjct 68192 AGAGTTTTGACAAAAATCTGCAT 68214 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | ||| || || |||| |||| Sbjct 68240 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTACCGTCTTCCAGTTGT 68299 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| | || |||||||| ||||||||||| || || || ||||| Sbjct 68300 TTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATTTTG 68359 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || || ||||| ||||| || | ||||| || || || || Sbjct 68360 GACTTGA-CGTTGTCGATAGTATCAGAAGATTCGACCTCCAAAGTAATAGTCTTACCAGT 68418 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||||||||| Sbjct 68419 CAGTGTCTTGACGAAAATTTGCAT 68442 >seq40 Length=705427 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || ||||||||||| || || || ||| | |||| || Sbjct 667710 CTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCG 667769 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || |||||||| Sbjct 667770 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTTG 667829 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || ||||| || | |||||| ||||| || ||||| ||||| | Sbjct 667830 TCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAGAGTGATG 667889 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAA 45331 || || || || | ||| || || || Sbjct 667890 GTCTTACCAGTCAAAGTCTTAACGAA 667915 >seq14 Length=538356 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || | || || ||||||||||| || || || | ||| | Sbjct 529474 CTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCG 529533 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || ||||| ||||| || Sbjct 529534 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTG 529593 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | |||||| ||||| || ||||| || |||| Sbjct 529594 TCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATA 529653 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||| ||| || || |||||||||||| Sbjct 529654 GTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATC 529689 >seq16 Length=189800 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || |||||||||||||| || || || | |||| || Sbjct 50831 CTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCG 50772 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | || |||| ||| ||||| || || || ||||| || Sbjct 50771 TCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGGATACCTTCCTTG 50712 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| ||| |||| || | ||||| ||||| || ||||| | ||| | Sbjct 50711 TCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATG 50652 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAA 45332 || || || || | |||||| |||||| Sbjct 50651 GTCTTACCAGTCAAAGTTTTGACAAAA 50625 >seq17 Length=290845 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 123595 AAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAA 123654 || ||||| |||||||| ||||| | |||| | ||||||||||| || ||||| || | Sbjct 195989 AAGCACAAACAGAAACCGGTACGCCATTCATGGTTTACAAAGACGCTTGTAACAGAAAGA 196048 Query 123655 CCAATCAGAGCAACTTGGGAACAATAAAAT-GTAGTAATCTTTGCTCCGAAATTATCGAA 123713 |||| ||| |||||||| || || |||| || | ||||| || | |||||| |||| Sbjct 196049 CCAACCAGCAAAACTTGGGTACTATCAAATCGTCG-AATCTGTGTTGCGAAATCGTCGAG 196107 Query 123714 TA 123715 || Sbjct 196108 TA 196109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002917498000