Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 seq3 120 4e-22 >seq5 Length=188055 Score = 165 bits (182), Expect = 1e-35 Identities = 771/1211 (64%), Gaps = 36/1211 (3%) Strand=Plus/Minus Query 116062 TCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATAT 116121 |||||||| || || || || |||||||| || ||||| || || | || || || ||| Sbjct 52553 TCCCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTAT 52494 Query 116122 GGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCA 116181 ||||| || | || | || | || || | || || || ||||| || ||| Sbjct 52493 GGGCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCA 52434 Query 116182 AAAATGCGAGCATTCATT--GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAA 116239 || || | ||| | | || | || || ||||| || || | | ||| |||| | Sbjct 52433 AAGATTTGTATATTTAGTAAGCGT--GCTTCTTCGGAGTCGAATGGTAAACGCAACAACA 52376 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || || || | |||||||||||| | |||| || | |||||||||||||| Sbjct 52375 TGAAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATC 52316 Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359 ||| || ||| || |||||| | || | || ||||| | |||| || |||| Sbjct 52315 TTCTTGCTTCCTCGACAGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGA 52256 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA- 116412 ||| || | |||||||| ||||||| | | | | | | ||| | ||||| Sbjct 52255 TAACTTTAGAAATTTCATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAG 52196 Query 116413 ---TTGACATACTTA--GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 || ||| | || | || | || |||| ||||| |||| |||||||| Sbjct 52195 ATGTTTCAATAAATGCTGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTG 52136 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 | | | ||| || | |||||| ||||| || || ||| || |||||||||| Sbjct 52135 GAGCGGAGTATTCAACAATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCT 52076 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 |||| || || || ||||||| ||||||||||| | | | | || || || || |||| Sbjct 52075 TTTGGTTGGATTTCCTGTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCG 52016 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 |||| | | | |||| | ||| | | ||| | ||| || | || | Sbjct 52015 TTTGTGCTTCCAATATAGAGTACCACAATTTTTGGGCCTTGATAGTC---TTACCACGGC 51959 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAG 116705 | || | ||||| || || ||||| ||||| || ||||| ||| | || | || Sbjct 51958 CTTCTTTTTCGTAACGGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTA-AG 51900 Query 116706 CCCTGGTGCCTTATCT-GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 || ||| ||| || | ||| |||| | || ||| || || || || ||||||| Sbjct 51899 CC-TGGAGCCG-ATGTAGGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCA 51842 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824 |||| || || || | ||| || || | ||| | ||| | || |||||| | | Sbjct 51841 TGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTAC 51782 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | ||||| | | || | ||||| | |||||| |||||||| || |||| || | Sbjct 51781 CGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATA 51722 Query 116885 CCGCGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGT 116938 || | | || |||| || ||| ||||| ||||| | || || || Sbjct 51721 GAGCAAAGGCACCAGGTCTCTTGTTACCACC---CTGGTCAACATAACGGGCAGTGTTGT 51665 Query 116939 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 116998 | || || || | ||| ||||| | || | ||| || || || || ||| || Sbjct 51664 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 51605 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | | || | | | ||| || || | ||||||||| || || || || || Sbjct 51604 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 51545 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 || || ||| | | | || ||||||| || || || || ||| |||| |||| | | Sbjct 51544 AAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTA 51485 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||| ||| |||||||| ||| ||||||||||||||||||| | ||||| | |||| Sbjct 51484 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 51425 Query 117179 GGATGAACATACCTT-GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCC 117237 || || || || |||||||| | ||||| || | | | ||||| || Sbjct 51424 -GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCA 51366 Query 117238 CCGTGAATACC 117248 ||||||||||| Sbjct 51365 CCGTGAATACC 51355 >seq3 Length=553868 Score = 120 bits (132), Expect = 4e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 163353 CCAGTAGGTGTGTACGGTCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAGAGCGGTATC 163412 ||||| ||| |||||| | | || |||||||| || || || ||||| | |||||| Sbjct 462686 CCAGTCGGTACCTACGGTAGAATCGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATT 462745 Query 163413 CAAGTTGGTGCGGGTGTTGTGGATCCAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTC 163472 ||| ||||| |||||||| || ||||||||| ||||||||||| || | | || Sbjct 462746 CAAACGGGTGCTGGTGTTGTCGACAGAGACTACACCGGTGAAGTCAAGGTTATCTTATTT 462805 Query 163473 AATCACGGACACATGGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTA 163532 ||||| ||| | ||||||| |||||||| || ||||| ||||| ||| | ||||| Sbjct 462806 AATCATTCACAGAAGGATTTCGCGATCAAAAAAGGTGATCGTATCGCCCAATTGATCTTG 462865 Query 163533 GAGAGG 163538 || ||| Sbjct 462866 GAAAGG 462871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506816558000