Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq17 132 5e-26 >seq5 Length=188055 Score = 143 bits (158), Expect = 3e-29 Identities = 577/896 (64%), Gaps = 37/896 (4%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| || | ||| || | ||| |||||| |||||||| || | | | |||||| | Sbjct 51844 TCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCT 51785 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || |||| || ||| || | ||||| | |||||||| |||||||| || |||| Sbjct 51784 TACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAAT 51725 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 ||| || | |||| |||| || ||||| || || || | ||| | |||||| |||| Sbjct 51724 ATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGT 51665 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | ||| || | | || || || | || || || || | ||| ||| Sbjct 51664 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 51605 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 || | || | || || ||| | ||| |||||||| || |||| || || | Sbjct 51604 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 51545 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| || | || || || || ||||| || |||||| |||| | || Sbjct 51544 AAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTA 51485 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | ||||| |||||||| || | || || | || ||||| |||||||| || | Sbjct 51484 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 51425 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT---ATCCC 48687 || |||| |||| || | ||| ||||| ||||| | | | | || || ||| | Sbjct 51424 GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCAC 51365 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747 ||| ||||||| | || | ||| | | | ||| || | |||| ||| || Sbjct 51364 CGTGA---ATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAACTTGAC 51308 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAA 48806 || | | |||| | || || ||| || ||||||||||| || || |||| |||| Sbjct 51307 CGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTGTACTGAA 51248 Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TAT----ATACT- 48860 || || | |||| | ||| | ||| |||| | | ||||| | || || ||| | Sbjct 51247 AA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTTGTTTTCCATGACAATATTG 51189 Query 48861 ---ACATC--CATTA--CAT---------TTTTTGA-TATAA---TTGA-TTCCTTGTAA 48899 ||||| || | ||| ||| | || | |||| | | ||| Sbjct 51188 TAAACATCGTCAGAAATCATAGGAGCGGCTTTACCAGTAGCAGGGTTGACGTATCTATAA 51129 Query 48900 AGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGAT 48959 ||||| || ||||| | | ||| ||| | |||| |||||| | |||||| || | Sbjct 51128 AGATCCTCAACAACTTTAGAAAACTGTTTCGTGGTTTGTTTATGTAAATTAGAAATGGCG 51069 Query 48960 ATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATATTTC 49018 ||||||||||| || |||| |||||||| |||| || || ||||| | | || |||| Sbjct 51068 ATTCTAGCAGCCAAAGTAGCGTAATCTGGGTGAACAGTGGT-CATGTAAGCACATGTTTC 51010 Query 49019 TGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074 || || || |||||| || | || || |||||| ||| | ||| ||||| Sbjct 51009 AGCGGCCAAATTATCTAGCTCGATCGTTGTGACACCTTCATAGACACCTGAAATAA 50954 >seq17 Length=290845 Score = 132 bits (146), Expect = 5e-26 Identities = 547/861 (64%), Gaps = 5/861 (1%) Strand=Plus/Minus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || || || |||| ||||| |||||| |||| ||| || ||| | | ||| Sbjct 196157 AGGGCAATGGAAGCTAAGTTACAAACAGCTGTTTCATCTGGGGAAGAATACTCGACGATT 196098 Query 47937 TCAGCACATAGATTACCAC-ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 || ||| ||||| | || |||||||||||||||| ||||| || || | |||| Sbjct 196097 TCGCAACACAGATT-CGACGATTTGATAGTACCCAAGTTTTGCTGGTTGGTCTTTCTGTT 196039 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| ||||| ||||||| ||| || || || || |||||| | || | || | ||| | Sbjct 196038 ACAAGCGTCTTTGTAAACCATGAATGGCGTACCGGTTTCTGTTTGTGCTTGTAAGATGGC 195979 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| || | ||||| || | | || | | || |||||| || Sbjct 195978 GTACCACACTTTTTGGGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGGT 195922 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||| || || ||||| || || | || | || || || || | | || | Sbjct 195921 GTATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGAACTTGGTGA 195862 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 | | | ||| || |||| | || || | |||| || | ||| || ||||| || Sbjct 195861 AAATAGGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAG 195802 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || || ||||| || | | | |||||| || ||| | | || | | |||| Sbjct 195801 GGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAAC 195742 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 |||||| | || || ||||||||||| || || | | || | |||| |||| || Sbjct 195741 AAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTT 195682 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 ||||| ||||| || | || | ||||| || || | || | | ||| || | | Sbjct 195681 GTTACCACCTTGGTCCACGTAACGTGCAGTGTTATTGAAGACACGGATCATGGGAATCAA 195622 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||||| |||| ||||| || | ||||||| || | | | ||||| | || Sbjct 195621 CCCATTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGAT 195562 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 || ||| | ||||||||| | || || || | |||||| ||| | || || || Sbjct 195561 ATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTA 195502 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 ||| ||||| || || || |||| | || |||||| ||||||||| || || Sbjct 195501 AATACCTTCGATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTG 195442 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 || || | |||||||| || || || || ||| | || || || ||| | ||| Sbjct 195441 TGGCGTACCGGCATTAAATAGAGTGGGGGAAGCGTGAGTGAAGTATCTCAATGACATCAA 195382 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 || || || | | || || || || || | || ||||| | | |||||||| Sbjct 195381 GTTGTAAGTCTTCAGCACGGACTCGATGTCGCTACCGTGGATACCCAGGGCCACACGCAT 195322 Query 48716 TAACATATATTGAGGTCTTTC 48736 | || || ||| || | ||| Sbjct 195321 GACCAGATGTTGGGGACGTTC 195301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108448682000