Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07]
50 sequences; 11,623,528 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq5 143 3e-29
seq17 132 5e-26
>seq5
Length=188055
Score = 143 bits (158), Expect = 3e-29
Identities = 577/896 (64%), Gaps = 37/896 (4%)
Strand=Plus/Minus
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270
|||| || | ||| || | ||| |||||| |||||||| || | | | |||||| |
Sbjct 51844 TCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCT 51785
Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330
| || |||| || ||| || | ||||| | |||||||| |||||||| || ||||
Sbjct 51784 TACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAAT 51725
Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390
||| || | |||| |||| || ||||| || || || | ||| | |||||| ||||
Sbjct 51724 ATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGT 51665
Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450
| | || | | ||| || | | || || || | || || || || | ||| |||
Sbjct 51664 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 51605
Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510
|| | || | || || ||| | ||| |||||||| || |||| || || |
Sbjct 51604 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 51545
Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570
|||||| || | || || || || ||||| || |||||| |||| | ||
Sbjct 51544 AAGCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTA 51485
Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630
| ||||| |||||||| || | || || | || ||||| |||||||| || |
Sbjct 51484 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 51425
Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT---ATCCC 48687
|| |||| |||| || | ||| ||||| ||||| | | | | || || ||| |
Sbjct 51424 GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCAC 51365
Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747
||| ||||||| | || | ||| | | | ||| || | |||| ||| ||
Sbjct 51364 CGTGA---ATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAACTTGAC 51308
Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAA 48806
|| | | |||| | || || ||| || ||||||||||| || || |||| ||||
Sbjct 51307 CGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTGTACTGAA 51248
Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TAT----ATACT- 48860
|| || | |||| | ||| | ||| |||| | | ||||| | || || ||| |
Sbjct 51247 AA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTTGTTTTCCATGACAATATTG 51189
Query 48861 ---ACATC--CATTA--CAT---------TTTTTGA-TATAA---TTGA-TTCCTTGTAA 48899
||||| || | ||| ||| | || | |||| | | |||
Sbjct 51188 TAAACATCGTCAGAAATCATAGGAGCGGCTTTACCAGTAGCAGGGTTGACGTATCTATAA 51129
Query 48900 AGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGAT 48959
||||| || ||||| | | ||| ||| | |||| |||||| | |||||| || |
Sbjct 51128 AGATCCTCAACAACTTTAGAAAACTGTTTCGTGGTTTGTTTATGTAAATTAGAAATGGCG 51069
Query 48960 ATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATATTTC 49018
||||||||||| || |||| |||||||| |||| || || ||||| | | || ||||
Sbjct 51068 ATTCTAGCAGCCAAAGTAGCGTAATCTGGGTGAACAGTGGT-CATGTAAGCACATGTTTC 51010
Query 49019 TGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074
|| || || |||||| || | || || |||||| ||| | ||| |||||
Sbjct 51009 AGCGGCCAAATTATCTAGCTCGATCGTTGTGACACCTTCATAGACACCTGAAATAA 50954
>seq17
Length=290845
Score = 132 bits (146), Expect = 5e-26
Identities = 547/861 (64%), Gaps = 5/861 (1%)
Strand=Plus/Minus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || || || |||| ||||| |||||| |||| ||| || ||| | | |||
Sbjct 196157 AGGGCAATGGAAGCTAAGTTACAAACAGCTGTTTCATCTGGGGAAGAATACTCGACGATT 196098
Query 47937 TCAGCACATAGATTACCAC-ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
|| ||| ||||| | || |||||||||||||||| ||||| || || | ||||
Sbjct 196097 TCGCAACACAGATT-CGACGATTTGATAGTACCCAAGTTTTGCTGGTTGGTCTTTCTGTT 196039
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
||| ||||| ||||||| ||| || || || || |||||| | || | || | ||| |
Sbjct 196038 ACAAGCGTCTTTGTAAACCATGAATGGCGTACCGGTTTCTGTTTGTGCTTGTAAGATGGC 195979
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||| || | ||||| || | | || | | || |||||| ||
Sbjct 195978 GTACCACACTTTTTGGGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGGT 195922
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
|||| || || ||||| || || | || | || || || || | | || |
Sbjct 195921 GTATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGAACTTGGTGA 195862
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
| | | ||| || |||| | || || | |||| || | ||| || ||||| ||
Sbjct 195861 AAATAGGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAG 195802
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295
|| || ||||| || | | | |||||| || ||| | | || | | ||||
Sbjct 195801 GGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAAC 195742
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
|||||| | || || ||||||||||| || || | | || | |||| |||| ||
Sbjct 195741 AAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTT 195682
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
||||| ||||| || | || | ||||| || || | || | | ||| || | |
Sbjct 195681 GTTACCACCTTGGTCCACGTAACGTGCAGTGTTATTGAAGACACGGATCATGGGAATCAA 195622
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475
|||||||| |||| ||||| || | ||||||| || | | | ||||| | ||
Sbjct 195621 CCCATTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGAT 195562
Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535
|| ||| | ||||||||| | || || || | |||||| ||| | || || ||
Sbjct 195561 ATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTA 195502
Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595
||| ||||| || || || |||| | || |||||| ||||||||| || ||
Sbjct 195501 AATACCTTCGATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTG 195442
Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655
|| || | |||||||| || || || || ||| | || || || ||| | |||
Sbjct 195441 TGGCGTACCGGCATTAAATAGAGTGGGGGAAGCGTGAGTGAAGTATCTCAATGACATCAA 195382
Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715
|| || || | | || || || || || | || ||||| | | ||||||||
Sbjct 195381 GTTGTAAGTCTTCAGCACGGACTCGATGTCGCTACCGTGGATACCCAGGGCCACACGCAT 195322
Query 48716 TAACATATATTGAGGTCTTTC 48736
| || || ||| || | |||
Sbjct 195321 GACCAGATGTTGGGGACGTTC 195301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108448682000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |