Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 seq14 104 2e-17 seq41 91.5 1e-13 seq16 82.4 6e-11 >seq19 Length=415998 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| |||| || || || || || | || || || Sbjct 68214 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 68155 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| ||||| | || || ||| Sbjct 68154 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAA 68095 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| ||||||||| |||| |||| ||||| || ||||||||||| Sbjct 68094 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 68035 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||| | ||| |||| ||||||| |||| || Sbjct 68034 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTAAGACTAAGAGGTGG 67988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | || || || || ||||| | || || || Sbjct 68442 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 68383 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | | || || || || ||||| |||||| | || ||| ||| Sbjct 68382 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 68323 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| || |||||||| ||||| || | ||||| || ||||||||||| Sbjct 68322 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTGTCGGATTACAAC 68263 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || | ||| |||| |||| || |||| || Sbjct 68262 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 68216 >seq14 Length=538356 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||| ||||||||||| || || |||||| | ||| || || Sbjct 529691 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCT 529632 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || | | | | || || |||||| ||||| ||||| | || || Sbjct 529631 TCAGACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGAC 529572 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | ||| ||||| || |||| || | |||||| || | || ||| Sbjct 529571 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTAC 529512 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| || || || || ||| |||| || ||| || |||| || Sbjct 529511 AACATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGG 529462 >seq41 Length=1011639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 205/299 (69%), Gaps = 12/299 (4%) Strand=Plus/Minus Query 34314 GAGCTCAGTCTCCGGGTTGTCACA--TTCCGGACACAACACAAACTTGCGGATGAAACCA 34371 || ||| || || || || | ||| |||| ||| | |||||| || |||||| || Sbjct 526695 GATCTCGGTTTCTGGATTCTTACAACTTCC--ACAAAGAACAAACCTGTTGATGAACCCG 526638 Query 34372 TCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431 || | || ||| || |||||| | | || || ||||| || | | || || || Sbjct 526637 TCCAACACGTCTTGCAACTTAGCAGGTTCATGAACACCGTTAACCAAATAACGATCTTTG 526578 Query 34432 TTGTAATCGACCTGC--GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG-GTAA 34488 | | || || | ||||| || ||||| ||| | ||||||||||| | || ||| Sbjct 526577 TCG--ATGGAGATAGAGGTTTGAGCACCCAGTTCGAAACCGAAGTACTT-GACGATGTAT 526521 Query 34489 ATGGCCGGAC-GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGAT 34547 ||| || | || ||| ||| | |||||| || | || ||| | ||| | || ||||| Sbjct 526520 GGGGCAGGTCTGTTCAA-CGCATGGGCGATGTCAGCCACGTTCAGGATTGCTGTTTTGAT 526462 Query 34548 GCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 ||||| || | ||||||||||| || ||| | ||||||||||| |||||||||| Sbjct 526461 ACCGTTACCTCTACCTTCGACCTTAGCCTGGATTGGAGGCATTTTGTAACGGTAGAACG 526403 >seq16 Length=189800 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110282 TTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTC 110341 |||||||||||||| || || || ||||| || | ||| || || || ||| | Sbjct 50626 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 50685 Query 110342 GGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTT 110401 | | | || || |||||| ||||| ||||| | || || ||||||||| | Sbjct 50686 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 50745 Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 || | ||| ||||| || |||| || | ||||| || | || |||||||| ||||| Sbjct 50746 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAG 50805 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || | || || ||| || |||| || Sbjct 50806 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 50843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841348424650