Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 5e-14 seq50 87.8 2e-12 seq13 82.4 1e-10 >seq14 Length=538356 Score = 93.3 bits (102), Expect = 5e-14 Identities = 235/355 (66%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 168527 AGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGT 168586 |||| | |||||| || || ||| | || ||| | || | ||| ||| |||||| Sbjct 122009 AGAATTATTATGGTTTGTAGCCGGTGCTACAGATGCTAATCTCTTATCTGAGCAAGGTGT 121950 Query 168587 TAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAG 168646 ||| | ||| ||| |||||| |||||||||| || ||| ||| | || || || Sbjct 121949 AAAAATCTGGGACGGTAATGGGTCTCGTGAATACTTGGATAAGATTGGGCTCACGGATAG 121890 Query 168647 AAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATA 168706 ||||| ||| || | || || ||||||| || |||||||||||| || || ||||| Sbjct 121889 AAAAGTAGGAGACCTGGGCCCCGTTTATGGGTTCCAATGGAGACATTTCGGTGCCCAATA 121830 Query 168707 TATTGAC-TGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAA 168765 | ||| || ||| || || ||||||||||| | || || | | || |||| Sbjct 121829 CAA-GACGTGCGATGATGACTATACCGGACAAGGCATCGATCAGCTGAAGCAGGTTATAC 121771 Query 168766 ATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCAC 168825 | | ||| | | || || | |||||||||| | || | | |||| || || Sbjct 121770 ACAAATTAAAAACAAACCCTTACGATAGAAGAATTATCATGAGTGCTTGGAATCCTGCAG 121711 Query 168826 AACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTAAG 168880 | |||| || |||| | | || || || || | ||| || |||||||| || Sbjct 121710 ATTTTGACAAGATGGCTTTACCACCATGCCATATTTTTTCACAGTTTTATGTCAG 121656 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 ||| |||| || || ||||| ||| | |||| | |||| || ||| |||||| | Sbjct 261703 CCTCAAATCGGTGACAAATTCGCTTCTCGTCATGGTC-AAAAGGGTACTATTGGTATCAC 261645 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 ||| ||||||||||||||||||||| |||||| ||||||||| | ||||| || Sbjct 261644 ATATCGTAGAGAAGATATGCCATTTACAGCAGAAGGTATCGTACCAGATTTAATTATCAA 261585 Query 193565 TCCAAATTGTATTCCATCCAGAATGAC 193591 ||| || ||||||||| | ||||| Sbjct 261584 TCCTCATGCTATTCCATCTCGTATGAC 261558 >seq50 Length=415935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 51867 ATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAA 51926 |||||| |||| || ||||| || | ||||| | ||||||||| |||||| Sbjct 187678 ATGGATAATGATCCAGTTCTATTCAACCGTCAACCTTCGCTTCATAAAATGTCTATGATG 187619 Query 51927 AGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTGGCTATGACTAAA 51986 | || ||| ||| || ||| ||||| | | |||||||| || | ||| Sbjct 187618 GCTCATAGAGTGAAAGTTATTCCATATTCTACATTCAGATTGAATTTGTCTGTCACTTCT 187559 Query 51987 GCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATC 52039 ||||||| || ||||||||||| |||||||||||| | |||||||||||||| Sbjct 187558 CCATATAACGCCGATTTTGATGGTGATGAAATGAATCTTCATGTTCCTCAATC 187506 >seq13 Length=164955 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 |||||| | || || ||||||| ||| || |||| | |||| || ||||||||| || Sbjct 40689 CCTGAACTGGGAGACAAATTTTCATCAAGACATGGAC-AAAAGGGTGTTTGTGGTATTAT 40631 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 | ||||||||||||||| || | | | |||||| || |||||||||||||| || Sbjct 40630 TGTCAAACAAGAAGATATGCCTTTCAATGATCAAGGTATTGTGCCAGATATTATTATGAA 40571 Query 193565 TCCAAATTGTATTCCATCCAGAATGAC 193591 || | || | |||||| | ||||| Sbjct 40570 CCCTCACGGTTTCCCATCCCGTATGAC 40544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177203014000