Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq14 141 9e-29 seq40 136 4e-27 seq19 134 1e-26 seq16 114 1e-20 >seq14 Length=538356 Score = 141 bits (156), Expect = 9e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || ||| || | ||||| ||||| |||||||| ||||||||||| | | Sbjct 529462 CCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 529521 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || ||| || | || || || ||||| ||||| | || || || || || Sbjct 529522 AAAGTTCTGCC-GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 529580 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||| || ||||| ||| | ||||| || ||||| || Sbjct 529581 AATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAAC 529640 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || ||||| || |||||||||||||| || |||||||||||||| ||| Sbjct 529641 TTCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 529692 >seq40 Length=705427 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | |||| ||||||||||||||||||||||||||| Sbjct 667698 CCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 667757 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || | || || || ||||| ||||| | || || || || || Sbjct 667758 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 667817 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || |||||| ||| | ||||| || ||||| || Sbjct 667818 ATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACT 667877 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAA 134704 || ||||| ||||| ||||| || ||||| |||||||| Sbjct 667878 TCTAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 667915 >seq19 Length=415998 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 || || ||||| |||| || || | ||| || || ||||||||||||||||| ||||| Sbjct 67529 TTGCCACCTCTTAGTCTCAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTATAGTCT 67588 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | || || | | | || || || ||||| |||||||||||||| | ||| || || || Sbjct 67589 GACAGCGTTCTACCA-TCTTCCAGTTGTTTCCCTGCAAAAATCAATCTCTGTTGGTCTGG 67647 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || ||||| || || || || || || || ||| | ||||| || ||||| Sbjct 67648 AGGAATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTC 67707 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || || ||||| ||||||||||| || ||||||||||| Sbjct 67708 GACCTCTAAAGTGATAGTCTTACCAGTTAAAGTTTTGACAAAAATTTGCAT 67758 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || | | || | ||| || ||||||||||||||||||||||| || | | Sbjct 68216 CCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCCGAC 68275 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | | ||| || || ||||| || || |||||||| | ||| || || || || Sbjct 68276 AGCGTTCT-ACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGG 68334 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || || ||||| ||||| ||| | || || || ||||| || Sbjct 68335 AATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCGAC 68394 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| || ||||| || | || || |||||||||||||| Sbjct 68395 CTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCAT 68442 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| |||| | || | ||| || || |||||||||||||||||||| || | | Sbjct 67988 CCACCTCTTAGTCTTAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGAC 68047 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | | || || | |||||| |||||||||||||| | ||| || || || || Sbjct 68048 AGCGTTCTACCA-TCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGAGG 68106 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || || || ||| | ||||| || ||||| || Sbjct 68107 AATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCGAC 68166 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || || ||||| |||| |||||| || ||||| ||||| Sbjct 68167 CTCCAAAGTGATAGTCTTACCAGTTAGAGTTTTGACAAAAATCTGCAT 68214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCC 134545 || ||||| || | | || | ||| || ||||| || |||||||||||||| | || Sbjct 67760 CCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCCGAT 67819 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | | ||| || || ||||| || || |||||||| | ||| || || || || Sbjct 67820 AGCGTTCT-ACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGG 67878 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || ||||| || | ||||| || |||| || Sbjct 67879 AATACCTTCCTTGTCCTGGATCTTAGACTTGACGTTATCGATGGTGTCAGAATATTCAAC 67938 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| |||||||| | |||||| || ||||| ||||| Sbjct 67939 CTCCAAGGTTATGGTCTTACCGGTCAGAGTTTTGACAAAAATCTGCAT 67986 >seq16 Length=189800 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || ||| || | |||| |||||||||||||| ||||||||||| | | Sbjct 50843 CCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 50784 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | ||| || | || || || ||||| || || | || || || || || Sbjct 50783 AA-GGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGG 50725 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||||||| ||| ||||| ||| | ||||| || ||||| || Sbjct 50724 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 50665 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 || | ||| ||||| ||||| || |||||||| || ||| Sbjct 50664 TTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAA 50625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398084126000