Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 185 1e-41 seq3 111 2e-19 >seq5 Length=188055 Score = 185 bits (204), Expect = 1e-41 Identities = 777/1209 (64%), Gaps = 36/1209 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || || || || |||||||| || ||||| || || | || || || ||||| Sbjct 52551 CCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTATGG 52492 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 ||| || | || | || | || || | || || || ||||| |||||||| Sbjct 52491 GCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCAAA 52432 Query 118463 AATGCGAGCATTCATT--GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 118520 || | ||| | | || | || || ||||| || || | | || |||| || Sbjct 52431 GATTTGTATATTTAGTAAGCGT--GCTTCTTCGGAGTCGAATGGTAAACGCAACAACATG 52374 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || || || | |||||||||||| | |||| || | |||||||||||||| | Sbjct 52373 AAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATCTT 52314 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 | || ||| || |||||| | || | || ||||| | |||| || |||| | Sbjct 52313 CTTGCTTCCTCGACAGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGATA 52254 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA--- 118691 || || | |||||||| ||||||| | | | | | | ||| | ||||| Sbjct 52253 ACTTTAGAAATTTCATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAGAT 52194 Query 118692 -TTGACATACTTA--GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || ||| | || | || | || |||| ||||| |||| |||||||| | Sbjct 52193 GTTTCAATAAATGCTGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGA 52134 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | | ||| || | |||||| ||||||||| || ||| || |||||||||||| Sbjct 52133 GCGGAGTATTCAACAATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTT 52074 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || || || ||||||| ||||||||||||| | | || || || || |||||| Sbjct 52073 TGGTTGGATTTCCTGTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTT 52014 Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATC---GGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 || | | | |||| | ||| | | ||| || | | ||| || | || Sbjct 52013 TGTGCTTCCAATATAGAGTACCACAATTTTTGGGC--CTTG-ATAGTC---TTACCACGG 51960 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACG--GCCTCTGAGA 118983 || |||| ||||| || || ||||||||||| || ||||| | | | || | | Sbjct 51959 CCTTCTTTTTCGTAACGGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTA-A 51901 Query 118984 GCCCTGGTGCCTTATCTGGGC-AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 119042 ||| ||| ||| || | || |||| | || ||| || || || || |||||| Sbjct 51900 GCC-TGGAGCCG-ATGTAGGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTC 51843 Query 119043 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 119102 ||||| || || || | ||| || || | ||| | ||| | || |||||| | Sbjct 51842 ATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTA 51783 Query 119103 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 119162 || ||||| | | || | ||||| | |||||| |||||||| || |||| || Sbjct 51782 CCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATAT 51723 Query 119163 ACCGCGATTG-ACCCCTTACGACG--ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 | || | | ||| | | |||| |||||| ||||| | |||||| ||| Sbjct 51722 AGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGTTG 51663 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGAC 119279 || ||||| | ||| ||||| | || | || || || || || ||| ||| Sbjct 51662 AAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAG 51603 Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339 | || | | | ||| || || | ||||||||| || || || || || Sbjct 51602 CCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAA 51543 Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 || || ||| | | | || ||||||| || || || || ||| |||| |||| | ||| Sbjct 51542 GCACATTCCTTCAAAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGG 51483 Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 || ||| |||||||||||| | ||||||||||||||||| | |||||| | ||||| Sbjct 51482 AAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGA 51423 Query 119460 ATGAACATACCTT-GGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 | || || || |||||||| || ||||| || | |||| ||||| || || Sbjct 51422 GTAAAG-TATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACC 51364 Query 119519 GTGAATACC 119527 ||||||||| Sbjct 51363 GTGAATACC 51355 >seq3 Length=553868 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 167937 CCAGTAGGTGTCTACGGTCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATC 167996 ||||| ||| ||||||| | | ||||||||||| || || || ||||| | ||||| Sbjct 462686 CCAGTCGGTACCTACGGTAGAATCGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATT 462745 Query 167997 CAAGTTGGTGCGGGTGTTGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTC 168056 ||| ||||| |||||||| || |||||| || ||||||||||| || | | || Sbjct 462746 CAAACGGGTGCTGGTGTTGTCGACAGAGACTACACCGGTGAAGTCAAGGTTATCTTATTT 462805 Query 168057 AATCACGGGCACACAGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTA 168116 ||||| || | |||||| |||||||| || ||||| ||||| ||| | ||||| Sbjct 462806 AATCATTCACAGAAGGATTTCGCGATCAAAAAAGGTGATCGTATCGCCCAATTGATCTTG 462865 Query 168117 GAGAGG 168122 || ||| Sbjct 462866 GAAAGG 462871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434813478000